Search Results
| Mutant Information |
|---|
| Mutant Name | FN3930-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3930-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1607936 | A-T | HET | ||
| SBS | Chr1 | 21197418 | A-T | Homo | ||
| SBS | Chr2 | 1557705 | G-T | HET | ||
| SBS | Chr2 | 3818454 | A-G | HET | ||
| SBS | Chr2 | 31961111 | G-A | Homo | ||
| SBS | Chr3 | 20676808 | C-T | HET | ||
| SBS | Chr3 | 22986157 | G-A | HET | ||
| SBS | Chr4 | 16652436 | C-A | HET | ||
| SBS | Chr4 | 21866712 | T-A | HET | ||
| SBS | Chr4 | 24822094 | C-T | Homo | ||
| SBS | Chr4 | 27415322 | C-T | Homo | ||
| SBS | Chr5 | 2054796 | A-G | Homo | ||
| SBS | Chr5 | 4466469 | T-A | Homo | ||
| SBS | Chr5 | 23948714 | G-A | HET | ||
| SBS | Chr6 | 28227012 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g46480 |
| SBS | Chr6 | 28386898 | A-C | HET | ||
| SBS | Chr7 | 1810291 | T-C | HET | ||
| SBS | Chr7 | 13394519 | A-G | HET | ||
| SBS | Chr8 | 2659571 | G-C | Homo | ||
| SBS | Chr8 | 22410054 | A-T | HET | ||
| SBS | Chr8 | 26029597 | C-T | HET | ||
| SBS | Chr9 | 3831868 | T-G | HET | ||
| SBS | Chr9 | 13257431 | T-G | HET | ||
| SBS | Chr9 | 14699594 | C-T | HET | ||
| SBS | Chr10 | 6340601 | A-G | HET | ||
| SBS | Chr11 | 1208884 | A-G | HET | ||
| SBS | Chr11 | 10288065 | C-A | HET | ||
| SBS | Chr12 | 9392927 | T-G | HET | ||
| SBS | Chr12 | 12175192 | C-T | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 642278 | 642280 | 2 | |
| Deletion | Chr3 | 1108649 | 1108657 | 8 | |
| Deletion | Chr8 | 3252296 | 3252297 | 1 | |
| Deletion | Chr5 | 3366001 | 3376000 | 9999 | LOC_Os05g06540 |
| Deletion | Chr4 | 8960911 | 8960915 | 4 | |
| Deletion | Chr9 | 9666001 | 9724000 | 57999 | 9 |
| Deletion | Chr12 | 13061292 | 13061294 | 2 | |
| Deletion | Chr12 | 17999078 | 17999082 | 4 | LOC_Os12g30050 |
| Deletion | Chr2 | 18664547 | 18664548 | 1 | |
| Deletion | Chr11 | 19420949 | 19420958 | 9 | |
| Deletion | Chr3 | 19455637 | 19455890 | 253 | |
| Deletion | Chr11 | 20436791 | 20436798 | 7 | LOC_Os11g34870 |
| Deletion | Chr5 | 24950502 | 24950510 | 8 | LOC_Os05g42970 |
| Deletion | Chr12 | 25204537 | 25204542 | 5 | |
| Deletion | Chr5 | 27418928 | 27418937 | 9 | |
| Deletion | Chr11 | 27449274 | 27449282 | 8 | |
| Deletion | Chr6 | 28386885 | 28386886 | 1 | |
| Deletion | Chr1 | 37305599 | 37305600 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 15517904 | 15517905 | 2 | |
| Insertion | Chr6 | 4802 | 4802 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 16864980 | 17205480 | |
| Inversion | Chr5 | 17205474 | 17314015 | LOC_Os05g29910 |
| Inversion | Chr1 | 25148193 | 25400521 | |
| Inversion | Chr1 | 25153540 | 25400526 | LOC_Os01g43910 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 23366011 | Chr3 | 11876348 | LOC_Os03g20930 |
| Translocation | Chr11 | 24830135 | Chr10 | 20543868 | |
| Translocation | Chr8 | 28154622 | Chr3 | 11876348 | LOC_Os03g20930 |
| Translocation | Chr8 | 28154942 | Chr3 | 11811994 | LOC_Os03g20860 |
| Translocation | Chr8 | 28156051 | Chr5 | 17548359 | 2 |
| Translocation | Chr4 | 32897644 | Chr1 | 39114202 |