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Mutant Information |
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Mutant Name | FN3932-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3932-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 20
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr2 | 4704681 | G-A | HET | ||
SBS | Chr2 | 31870714 | C-T | Homo | ||
SBS | Chr3 | 20337898 | G-C | HET | ||
SBS | Chr4 | 3325509 | C-G | HET | ||
SBS | Chr4 | 6883817 | G-T | HET | ||
SBS | Chr4 | 11767218 | G-T | HET | ||
SBS | Chr4 | 14547660 | G-A | Homo | ||
SBS | Chr4 | 14787421 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g25490 |
SBS | Chr4 | 15471100 | G-A | HET | ||
SBS | Chr4 | 16670581 | G-A | HET | ||
SBS | Chr4 | 19380676 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g32330 |
SBS | Chr5 | 3579783 | C-T | Homo | ||
SBS | Chr6 | 12913214 | G-A | Homo | ||
SBS | Chr6 | 17026505 | C-T | HET | ||
SBS | Chr7 | 6606518 | T-A | HET | ||
SBS | Chr7 | 29426157 | A-T | Homo | ||
SBS | Chr8 | 19041135 | G-A | HET | ||
SBS | Chr9 | 19835211 | T-A | Homo | ||
SBS | Chr11 | 9509459 | G-C | HET | ||
SBS | Chr11 | 15144387 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26450 |
Deletions: 15
Insertions: 6
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 41748498 | 41748498 | 1 | |
Insertion | Chr2 | 1509542 | 1509554 | 13 | |
Insertion | Chr7 | 15761476 | 15761477 | 2 | |
Insertion | Chr9 | 228192 | 228192 | 1 | |
Insertion | Chr10 | 317850 | 317850 | 1 | LOC_Os10g01490 |
Insertion | Chr11 | 27010692 | 27010692 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 12733334 | 12739104 | |
Inversion | Chr7 | 15737287 | 16171578 | LOC_Os07g27140 |
Translocations: 10
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 4649955 | Chr4 | 18885962 | LOC_Os08g08170 |
Translocation | Chr10 | 5539893 | Chr4 | 17668421 | 2 |
Translocation | Chr10 | 8466754 | Chr3 | 16766485 | LOC_Os03g29420 |
Translocation | Chr7 | 9456293 | Chr5 | 4379871 | 2 |
Translocation | Chr9 | 9725072 | Chr6 | 8613918 | LOC_Os06g15200 |
Translocation | Chr7 | 10180986 | Chr4 | 7199903 | 2 |
Translocation | Chr6 | 20154961 | Chr1 | 25847637 | |
Translocation | Chr11 | 22193579 | Chr4 | 5327080 | |
Translocation | Chr8 | 25068579 | Chr6 | 19289433 | |
Translocation | Chr3 | 32851798 | Chr1 | 12739096 | LOC_Os03g57640 |