Search Results
| Mutant Information |
|---|
| Mutant Name | FN3933-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3933-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16884303 | C-T | HET | ||
| SBS | Chr1 | 26868939 | A-T | Homo | ||
| SBS | Chr1 | 33420632 | G-A | Homo | ||
| SBS | Chr1 | 38938141 | G-A | Homo | ||
| SBS | Chr1 | 42360858 | C-T | Homo | ||
| SBS | Chr2 | 5267425 | A-G | HET | ||
| SBS | Chr2 | 10305818 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g17820 |
| SBS | Chr3 | 24464646 | G-A | Homo | ||
| SBS | Chr3 | 34352986 | G-A | Homo | ||
| SBS | Chr5 | 987619 | G-T | HET | ||
| SBS | Chr5 | 15507381 | G-T | Homo | ||
| SBS | Chr5 | 24041595 | A-G | HET | ||
| SBS | Chr6 | 12397323 | A-T | HET | ||
| SBS | Chr6 | 19290324 | G-A | Homo | ||
| SBS | Chr6 | 22224264 | T-C | Homo | ||
| SBS | Chr6 | 31205919 | A-G | Homo | ||
| SBS | Chr7 | 28750250 | C-T | Homo | ||
| SBS | Chr8 | 1683226 | G-A | HET | ||
| SBS | Chr8 | 9086762 | C-T | Homo | ||
| SBS | Chr9 | 13805119 | C-G | HET | ||
| SBS | Chr9 | 14582184 | G-A | HET | ||
| SBS | Chr9 | 19138880 | G-T | HET | ||
| SBS | Chr10 | 4229767 | A-G | HET | ||
| SBS | Chr10 | 7105399 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g12740 |
| SBS | Chr12 | 2043310 | G-T | Homo | ||
| SBS | Chr12 | 5337979 | C-T | HET | ||
| SBS | Chr12 | 10497316 | G-A | HET | ||
| SBS | Chr12 | 10724331 | A-C | HET | ||
| SBS | Chr12 | 14953329 | C-G | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1900001 | 1916000 | 15999 | 3 |
| Deletion | Chr3 | 2973611 | 2973613 | 2 | |
| Deletion | Chr4 | 3565352 | 3565356 | 4 | |
| Deletion | Chr12 | 7231698 | 7231704 | 6 | |
| Deletion | Chr7 | 7266177 | 7266186 | 9 | |
| Deletion | Chr1 | 8739707 | 8739712 | 5 | LOC_Os01g15540 |
| Deletion | Chr2 | 10623255 | 10623256 | 1 | LOC_Os02g18310 |
| Deletion | Chr11 | 13382655 | 13382664 | 9 | |
| Deletion | Chr3 | 13755224 | 13755225 | 1 | |
| Deletion | Chr8 | 15264528 | 15264533 | 5 | |
| Deletion | Chr3 | 17308988 | 17308989 | 1 | |
| Deletion | Chr4 | 19724764 | 19724765 | 1 | LOC_Os04g32720 |
| Deletion | Chr12 | 22812001 | 22834000 | 21999 | 2 |
| Deletion | Chr5 | 24372545 | 24372546 | 1 | |
| Deletion | Chr6 | 26052507 | 26052508 | 1 | LOC_Os06g43340 |
| Deletion | Chr3 | 34924826 | 34924827 | 1 | |
| Deletion | Chr2 | 34951001 | 34984000 | 32999 | 5 |
| Deletion | Chr1 | 36649215 | 36649216 | 1 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 3870982 | 3870983 | 2 | |
| Insertion | Chr6 | 18875118 | 18875118 | 1 | |
| Insertion | Chr12 | 18998421 | 18998421 | 1 | LOC_Os12g31570 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 12558112 | 13090073 | LOC_Os11g21870 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2239005 | Chr1 | 2819544 | |
| Translocation | Chr11 | 5074004 | Chr7 | 420971 | LOC_Os11g09460 |
| Translocation | Chr12 | 6659879 | Chr5 | 2040949 | LOC_Os05g04430 |
| Translocation | Chr12 | 19969568 | Chr11 | 17059697 | 2 |