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| Mutant Information |
|---|
| Mutant Name | FN3934-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3934-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15988766 | G-T | Homo | ||
| SBS | Chr1 | 19762410 | G-A | HET | ||
| SBS | Chr1 | 20335370 | C-T | Homo | ||
| SBS | Chr1 | 36329983 | T-A | Homo | ||
| SBS | Chr10 | 10589943 | C-T | HET | ||
| SBS | Chr10 | 21536790 | C-T | HET | ||
| SBS | Chr10 | 4734131 | G-A | HET | ||
| SBS | Chr11 | 15647289 | C-T | Homo | ||
| SBS | Chr11 | 20736445 | G-A | HET | ||
| SBS | Chr11 | 20736446 | G-A | HET | ||
| SBS | Chr11 | 20736451 | G-A | HET | ||
| SBS | Chr12 | 21604348 | A-G | Homo | ||
| SBS | Chr3 | 15433205 | T-A | Homo | ||
| SBS | Chr3 | 17075963 | C-T | HET | ||
| SBS | Chr3 | 21991024 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g39598 |
| SBS | Chr3 | 31989547 | C-T | Homo | ||
| SBS | Chr3 | 32672322 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g57290 |
| SBS | Chr3 | 9690927 | T-A | Homo | ||
| SBS | Chr4 | 26491554 | T-C | HET | ||
| SBS | Chr4 | 29018538 | T-C | HET | ||
| SBS | Chr4 | 3040379 | G-A | HET | ||
| SBS | Chr4 | 385518 | C-A | Homo | ||
| SBS | Chr4 | 8974324 | C-A | Homo | ||
| SBS | Chr6 | 18131802 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g31200 |
| SBS | Chr6 | 20047106 | C-T | HET | ||
| SBS | Chr6 | 20666886 | C-T | HET | ||
| SBS | Chr7 | 12692966 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g22550 |
| SBS | Chr7 | 15083449 | C-A | HET | ||
| SBS | Chr7 | 21044007 | C-T | Homo | ||
| SBS | Chr7 | 21044010 | G-A | Homo | ||
| SBS | Chr8 | 12662139 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g21210 |
| SBS | Chr8 | 15569403 | C-T | HET | ||
| SBS | Chr8 | 6372384 | C-T | Homo | ||
| SBS | Chr9 | 13454119 | G-T | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 5648237 | 5648242 | 5 | |
| Deletion | Chr5 | 10865115 | 10865136 | 21 | |
| Deletion | Chr10 | 12796974 | 12796978 | 4 | |
| Deletion | Chr11 | 13238546 | 13238547 | 1 | LOC_Os11g23020 |
| Deletion | Chr3 | 13936053 | 13936081 | 28 | |
| Deletion | Chr12 | 15120034 | 15120043 | 9 | |
| Deletion | Chr12 | 15691330 | 15691331 | 1 | |
| Deletion | Chr8 | 16567784 | 16567791 | 7 | LOC_Os08g27110 |
| Deletion | Chr11 | 19416594 | 19416598 | 4 | |
| Deletion | Chr3 | 19927975 | 19927983 | 8 | |
| Deletion | Chr5 | 21911299 | 21911301 | 2 | |
| Deletion | Chr10 | 22677246 | 22677247 | 1 | LOC_Os10g42160 |
| Deletion | Chr4 | 23570261 | 23570262 | 1 | |
| Deletion | Chr4 | 24760600 | 24760606 | 6 | |
| Deletion | Chr11 | 25527122 | 25527124 | 2 | |
| Deletion | Chr5 | 26009564 | 26009565 | 1 | |
| Deletion | Chr6 | 31229558 | 31229559 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 5091446 | 5091446 | 1 | LOC_Os10g09440 |
| Insertion | Chr2 | 18058338 | 18058477 | 140 | |
| Insertion | Chr7 | 7927044 | 7927044 | 1 | |
| Insertion | Chr9 | 15529192 | 15529193 | 2 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 9803838 | Chr6 | 9802277 |