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| Mutant Information |
|---|
| Mutant Name | FN3935-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3935-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 21514318 | C-T | HET | ||
| SBS | Chr10 | 23111831 | C-T | Homo | ||
| SBS | Chr10 | 4043415 | A-G | HET | ||
| SBS | Chr11 | 9417353 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g16990 |
| SBS | Chr12 | 1549407 | T-G | HET | ||
| SBS | Chr2 | 17126500 | G-A | HET | ||
| SBS | Chr2 | 22804913 | C-T | Homo | ||
| SBS | Chr2 | 22804914 | C-T | Homo | ||
| SBS | Chr2 | 22804920 | C-T | Homo | ||
| SBS | Chr2 | 22804921 | C-T | Homo | ||
| SBS | Chr2 | 27011228 | A-G | Homo | ||
| SBS | Chr2 | 27887488 | A-G | Homo | ||
| SBS | Chr2 | 32568789 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g53200 |
| SBS | Chr2 | 697148 | A-G | HET | ||
| SBS | Chr3 | 16241302 | C-T | Homo | ||
| SBS | Chr3 | 16884723 | T-A | HET | ||
| SBS | Chr3 | 19874535 | A-G | HET | ||
| SBS | Chr3 | 23881073 | C-G | HET | ||
| SBS | Chr3 | 32334116 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g56740 |
| SBS | Chr4 | 14628445 | C-T | HET | ||
| SBS | Chr4 | 3268099 | T-C | HET | ||
| SBS | Chr5 | 11786374 | C-T | HET | ||
| SBS | Chr5 | 15554786 | G-A | HET | ||
| SBS | Chr5 | 19144570 | C-T | HET | ||
| SBS | Chr5 | 2971036 | T-C | HET | ||
| SBS | Chr6 | 15753272 | G-A | HET | ||
| SBS | Chr6 | 23441143 | A-T | HET | ||
| SBS | Chr6 | 9149757 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g16070 |
| SBS | Chr6 | 9149758 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g16070 |
| SBS | Chr8 | 5914958 | C-T | HET | ||
| SBS | Chr8 | 6427616 | G-T | HET | ||
| SBS | Chr8 | 804345 | C-T | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 1282335 | 1282349 | 14 | |
| Deletion | Chr8 | 1395715 | 1395718 | 3 | |
| Deletion | Chr6 | 1765668 | 1765670 | 2 | |
| Deletion | Chr6 | 3125755 | 3125760 | 5 | |
| Deletion | Chr8 | 3643029 | 3643030 | 1 | |
| Deletion | Chr2 | 6367798 | 6367799 | 1 | LOC_Os02g12220 |
| Deletion | Chr11 | 12116006 | 12116007 | 1 | |
| Deletion | Chr6 | 13420734 | 13420741 | 7 | |
| Deletion | Chr5 | 20189188 | 20189189 | 1 | |
| Deletion | Chr2 | 21487000 | 21487005 | 5 | |
| Deletion | Chr5 | 22054912 | 22054923 | 11 | |
| Deletion | Chr1 | 23143001 | 23161000 | 17999 | 2 |
| Deletion | Chr1 | 23311083 | 23311091 | 8 | |
| Deletion | Chr12 | 24227840 | 24227860 | 20 | |
| Deletion | Chr3 | 29825295 | 29825296 | 1 | LOC_Os03g51970 |
| Deletion | Chr1 | 31130420 | 31130427 | 7 | |
| Deletion | Chr3 | 31173282 | 31173283 | 1 | |
| Deletion | Chr2 | 32568792 | 32568798 | 6 | LOC_Os02g53200 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 33577823 | 33577824 | 2 | |
| Insertion | Chr10 | 12723232 | 12723232 | 1 | |
| Insertion | Chr11 | 9981486 | 9981486 | 1 | |
| Insertion | Chr6 | 12165190 | 12165190 | 1 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 3181504 | 3282053 | |
| Inversion | Chr4 | 3181921 | 3282058 | LOC_Os04g06120 |
| Inversion | Chr12 | 8554518 | 8627986 | LOC_Os12g15120 |
| Inversion | Chr10 | 9209217 | 9330182 | |
| Inversion | Chr3 | 27716853 | 28170959 | 2 |
| Inversion | Chr3 | 27716860 | 28170969 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 4757267 | Chr4 | 1178866 | |
| Translocation | Chr11 | 13769752 | Chr1 | 36109312 | |
| Translocation | Chr11 | 13769858 | Chr1 | 36109315 | |
| Translocation | Chr6 | 20343643 | Chr4 | 13171073 |