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| Mutant Information |
|---|
| Mutant Name | FN3941-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3941-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11823491 | T-A | HET | ||
| SBS | Chr1 | 11828823 | A-C | HET | ||
| SBS | Chr1 | 15168360 | C-A | HET | ||
| SBS | Chr1 | 16301372 | G-T | HET | ||
| SBS | Chr1 | 18004503 | G-A | HET | ||
| SBS | Chr1 | 38120992 | A-G | HET | ||
| SBS | Chr10 | 12641462 | G-C | HET | ||
| SBS | Chr10 | 16075811 | C-T | Homo | ||
| SBS | Chr11 | 18265780 | G-A | Homo | ||
| SBS | Chr11 | 25718865 | C-A | Homo | ||
| SBS | Chr12 | 24254494 | A-G | Homo | ||
| SBS | Chr12 | 8769411 | G-A | Homo | ||
| SBS | Chr2 | 21322150 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g35470 |
| SBS | Chr2 | 22149202 | G-A | Homo | ||
| SBS | Chr2 | 6577706 | C-T | HET | ||
| SBS | Chr3 | 35107250 | C-A | Homo | ||
| SBS | Chr4 | 1078600 | A-T | Homo | ||
| SBS | Chr4 | 3176805 | G-C | Homo | ||
| SBS | Chr4 | 6110493 | G-T | Homo | ||
| SBS | Chr4 | 8368460 | A-C | Homo | ||
| SBS | Chr4 | 8889503 | G-T | Homo | ||
| SBS | Chr5 | 13014830 | C-T | Homo | ||
| SBS | Chr5 | 13014831 | C-T | Homo | ||
| SBS | Chr5 | 14874707 | G-A | Homo | ||
| SBS | Chr5 | 4611832 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g08440 |
| SBS | Chr6 | 16786645 | T-G | HET | ||
| SBS | Chr7 | 846656 | C-A | HET | ||
| SBS | Chr8 | 20511414 | G-A | Homo | ||
| SBS | Chr9 | 2946770 | C-T | Homo | STOP_GAINED | LOC_Os09g06280 |
| SBS | Chr9 | 4274137 | C-G | Homo | ||
| SBS | Chr9 | 4526331 | C-T | Homo | ||
| SBS | Chr9 | 9830849 | C-T | Homo |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 680819 | 680820 | 1 | |
| Deletion | Chr10 | 1220827 | 1220828 | 1 | LOC_Os10g02960 |
| Deletion | Chr4 | 1632420 | 1632430 | 10 | |
| Deletion | Chr6 | 3133744 | 3133745 | 1 | |
| Deletion | Chr1 | 6235355 | 6235372 | 17 | |
| Deletion | Chr5 | 7264824 | 7264844 | 20 | |
| Deletion | Chr8 | 8504408 | 8504409 | 1 | |
| Deletion | Chr3 | 9104947 | 9104951 | 4 | |
| Deletion | Chr9 | 9966998 | 9966999 | 1 | |
| Deletion | Chr12 | 10411541 | 10411543 | 2 | |
| Deletion | Chr8 | 10724819 | 10724826 | 7 | |
| Deletion | Chr5 | 13034996 | 13034997 | 1 | |
| Deletion | Chr6 | 17344329 | 17344331 | 2 | |
| Deletion | Chr3 | 17532508 | 17532509 | 1 | |
| Deletion | Chr12 | 17634695 | 17634697 | 2 | |
| Deletion | Chr3 | 18162770 | 18162776 | 6 | |
| Deletion | Chr3 | 23165830 | 23165847 | 17 | LOC_Os03g41690 |
| Deletion | Chr5 | 23846241 | 23846242 | 1 | |
| Deletion | Chr2 | 25793963 | 25793972 | 9 | |
| Deletion | Chr2 | 35302909 | 35302917 | 8 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 14861304 | 14861304 | 1 | |
| Insertion | Chr3 | 12935273 | 12935274 | 2 |
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 5338299 | Chr1 | 25073970 | 2 |
| Translocation | Chr6 | 18908694 | Chr2 | 35862438 | |
| Translocation | Chr8 | 27804406 | Chr2 | 15723612 | 2 |