Search Results
| Mutant Information |
|---|
| Mutant Name | FN3942-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3942-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6433988 | A-G | HET | ||
| SBS | Chr1 | 26120293 | G-A | HET | ||
| SBS | Chr1 | 30038217 | C-T | HET | ||
| SBS | Chr2 | 2834088 | T-A | Homo | ||
| SBS | Chr2 | 18922946 | C-G | HET | ||
| SBS | Chr3 | 4303137 | C-T | HET | ||
| SBS | Chr3 | 26927552 | C-T | HET | ||
| SBS | Chr4 | 12088218 | T-A | Homo | ||
| SBS | Chr4 | 23119796 | G-A | HET | ||
| SBS | Chr5 | 5379369 | C-T | Homo | ||
| SBS | Chr6 | 144295 | T-G | HET | ||
| SBS | Chr7 | 18771847 | T-A | HET | ||
| SBS | Chr8 | 6853025 | A-T | Homo | ||
| SBS | Chr9 | 5485113 | G-A | Homo | ||
| SBS | Chr9 | 12102867 | C-T | HET | ||
| SBS | Chr10 | 5697058 | A-T | Homo | ||
| SBS | Chr11 | 6177632 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g11170 |
| SBS | Chr11 | 15215422 | A-T | HET | ||
| SBS | Chr11 | 18310345 | A-T | HET | ||
| SBS | Chr11 | 24879159 | G-A | HET | ||
| SBS | Chr12 | 5463181 | T-G | Homo | ||
| SBS | Chr12 | 16724269 | G-A | Homo | ||
| SBS | Chr12 | 23984202 | C-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 4583857 | 4583865 | 8 | |
| Deletion | Chr10 | 5018856 | 5018857 | 1 | LOC_Os10g09280 |
| Deletion | Chr6 | 5213412 | 5213415 | 3 | |
| Deletion | Chr9 | 6042314 | 6042316 | 2 | |
| Deletion | Chr3 | 11619706 | 11619707 | 1 | |
| Deletion | Chr10 | 16082403 | 16082407 | 4 | |
| Deletion | Chr4 | 18421401 | 18421402 | 1 | |
| Deletion | Chr9 | 19499020 | 19499029 | 9 | |
| Deletion | Chr3 | 20531658 | 20531663 | 5 | |
| Deletion | Chr11 | 23834741 | 23834749 | 8 | |
| Deletion | Chr12 | 23984772 | 23984779 | 7 | |
| Deletion | Chr1 | 26728339 | 26728347 | 8 | |
| Deletion | Chr2 | 28400003 | 28400004 | 1 | |
| Deletion | Chr1 | 28923624 | 28923636 | 12 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 1736182 | 1736182 | 1 | |
| Insertion | Chr1 | 1918329 | 1918329 | 1 | |
| Insertion | Chr8 | 27528500 | 27528501 | 2 | LOC_Os08g43520 |
| Insertion | Chr10 | 14811315 | 14811315 | 1 | LOC_Os10g28460 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 3762028 | 3787782 | |
| Inversion | Chr3 | 21457259 | 21693079 | LOC_Os03g39020 |
| Inversion | Chr3 | 21457264 | 21693085 | LOC_Os03g39020 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 6773226 | Chr8 | 14543851 | LOC_Os08g24050 |
| Translocation | Chr7 | 6996422 | Chr2 | 27529497 | LOC_Os07g12350 |
| Translocation | Chr7 | 6996729 | Chr2 | 27529498 | LOC_Os07g12350 |
| Translocation | Chr11 | 7932134 | Chr3 | 21457265 | LOC_Os11g14180 |
| Translocation | Chr11 | 7932493 | Chr3 | 21693279 | LOC_Os11g14180 |
| Translocation | Chr6 | 11800665 | Chr4 | 5758034 | |
| Translocation | Chr11 | 15849697 | Chr9 | 605369 | LOC_Os09g01900 |
| Translocation | Chr11 | 15849856 | Chr9 | 605371 | LOC_Os09g01900 |
| Translocation | Chr8 | 17164278 | Chr6 | 26890170 | LOC_Os08g28130 |
| Translocation | Chr9 | 20148144 | Chr7 | 6996412 | 2 |
| Translocation | Chr9 | 20148161 | Chr7 | 6996152 | 2 |