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Mutant Information

Mutant Name	FN3943-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3943-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3390912	G-A	HET
SBS	Chr2	21603551	A-T	HET
SBS	Chr3	13639236	A-T	Homo
SBS	Chr3	25319413	C-T	HET
SBS	Chr3	35937224	G-A	Homo
SBS	Chr4	31811356	T-C	HET
SBS	Chr5	29434491	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51310
SBS	Chr6	14389093	C-T	HET
SBS	Chr6	27501653	T-C	HET
SBS	Chr6	28604821	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr8	21239301	A-T	HET
SBS	Chr9	4080945	A-G	HET
SBS	Chr10	3833282	C-A	HET	SPLICE_SITE_ACCEPTOR	LOC_Os10g07270
SBS	Chr10	10463370	G-A	HET
SBS	Chr12	26855887	C-G	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	5865931	5865948	17
Deletion	Chr11	8574326	8574328	2
Deletion	Chr2	11425884	11425892	8
Deletion	Chr12	12864637	12864640	3
Deletion	Chr8	15128068	15128076	8	LOC_Os08g24946
Deletion	Chr7	16590329	16590330	1	LOC_Os07g28380
Deletion	Chr6	17737315	17737324	9
Deletion	Chr2	18758234	18758235	1
Deletion	Chr4	20869466	20869475	9	LOC_Os04g34450
Deletion	Chr2	27161802	27161803	1
Deletion	Chr2	34821750	34821752	2	LOC_Os02g56820
Deletion	Chr1	41251047	41251069	22

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	22382116	22382121	6
Insertion	Chr4	5962836	5962837	2
Insertion	Chr6	26597810	26597811	2
Insertion	Chr11	20314170	20314171	2
Insertion	Chr1	23145025	23145025	1
Insertion	Chr3	17916094	17916186	93	LOC_Os03g31440
Insertion	Chr4	8492071	8492073	3	LOC_Os04g15610
Insertion	Chr6	25225861	25225861	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	26422362	26422744

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10944016	Chr6	10285827	2
Translocation	Chr6	14369992	Chr5	28566824
Translocation	Chr4	15518945	Chr2	22225358