Search Results
| Mutant Information |
|---|
| Mutant Name | FN3944-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3944-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2084505 | T-C | HET | ||
| SBS | Chr1 | 4201821 | G-A | HET | ||
| SBS | Chr1 | 31392570 | C-T | Homo | ||
| SBS | Chr2 | 3200896 | T-A | Homo | ||
| SBS | Chr2 | 3200910 | T-A | Homo | ||
| SBS | Chr2 | 18793579 | C-T | HET | ||
| SBS | Chr3 | 5306087 | G-A | Homo | ||
| SBS | Chr3 | 5766971 | A-G | Homo | ||
| SBS | Chr3 | 11591275 | A-G | HET | ||
| SBS | Chr3 | 35999192 | C-T | HET | ||
| SBS | Chr4 | 2138074 | G-A | Homo | ||
| SBS | Chr4 | 33880222 | C-T | HET | ||
| SBS | Chr5 | 3722507 | A-T | HET | ||
| SBS | Chr5 | 5486749 | A-G | HET | ||
| SBS | Chr5 | 5486757 | C-T | HET | ||
| SBS | Chr5 | 22746710 | G-T | Homo | ||
| SBS | Chr6 | 13560490 | G-A | Homo | ||
| SBS | Chr7 | 17944487 | C-T | HET | ||
| SBS | Chr7 | 21159509 | A-T | HET | ||
| SBS | Chr8 | 6429466 | C-A | Homo | ||
| SBS | Chr8 | 26629104 | G-T | HET | ||
| SBS | Chr8 | 27461770 | A-G | Homo | ||
| SBS | Chr9 | 16873446 | A-T | Homo | ||
| SBS | Chr9 | 18597862 | C-T | HET | ||
| SBS | Chr10 | 21101713 | A-G | HET | ||
| SBS | Chr11 | 4420877 | G-A | Homo | ||
| SBS | Chr11 | 11147450 | A-T | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 3177457 | 3177465 | 8 | |
| Deletion | Chr3 | 4374110 | 4374116 | 6 | |
| Deletion | Chr8 | 5344488 | 5344517 | 29 | |
| Deletion | Chr2 | 7483245 | 7483247 | 2 | |
| Deletion | Chr7 | 8796164 | 8796169 | 5 | |
| Deletion | Chr9 | 12612967 | 12612968 | 1 | |
| Deletion | Chr6 | 14299490 | 14299493 | 3 | |
| Deletion | Chr6 | 16695251 | 16695257 | 6 | |
| Deletion | Chr6 | 20521699 | 20521700 | 1 | |
| Deletion | Chr9 | 21503575 | 21503605 | 30 | LOC_Os09g37240 |
| Deletion | Chr2 | 21639724 | 21639726 | 2 | |
| Deletion | Chr6 | 21983983 | 21983984 | 1 | LOC_Os06g37224 |
Insertions: 5
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 2589166 | 2635505 | LOC_Os02g05390 |
| Inversion | Chr10 | 3784640 | 3784768 | |
| Inversion | Chr1 | 9139908 | 9140208 | LOC_Os01g16170 |
| Inversion | Chr2 | 12523591 | 12523771 | |
| Inversion | Chr2 | 16276454 | 17074850 | LOC_Os02g28850 |
| Inversion | Chr2 | 16388387 | 17075009 | LOC_Os02g28850 |
| Inversion | Chr11 | 17773093 | 18030352 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 6760992 | Chr7 | 6428288 | LOC_Os07g11640 |
| Translocation | Chr8 | 27473648 | Chr1 | 3092966 | LOC_Os08g43430 |