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| Mutant Information |
|---|
| Mutant Name | FN3946-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3946-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22474551 | A-G | HET | ||
| SBS | Chr1 | 40081107 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g68990 |
| SBS | Chr1 | 40081108 | T-A | Homo | ||
| SBS | Chr1 | 4425596 | G-T | HET | ||
| SBS | Chr1 | 8675641 | T-A | Homo | ||
| SBS | Chr10 | 6719703 | A-C | HET | ||
| SBS | Chr10 | 8352793 | C-T | HET | ||
| SBS | Chr11 | 14480752 | G-A | Homo | ||
| SBS | Chr11 | 4777627 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g08990 |
| SBS | Chr2 | 11385050 | C-T | Homo | ||
| SBS | Chr2 | 4022314 | T-C | HET | ||
| SBS | Chr3 | 19248759 | A-G | HET | ||
| SBS | Chr4 | 8386371 | C-T | HET | ||
| SBS | Chr5 | 17525153 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g30240 |
| SBS | Chr5 | 2900895 | T-C | HET | ||
| SBS | Chr5 | 9335012 | G-A | HET | ||
| SBS | Chr6 | 26250339 | C-G | HET | ||
| SBS | Chr7 | 18745419 | G-T | Homo | ||
| SBS | Chr7 | 4874330 | G-A | Homo | ||
| SBS | Chr8 | 26633126 | G-A | Homo | ||
| SBS | Chr8 | 4706369 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g08220 |
| SBS | Chr9 | 10018112 | C-G | HET | ||
| SBS | Chr9 | 5100226 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g09470 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2921084 | 2921089 | 5 | |
| Deletion | Chr8 | 3577001 | 3603000 | 25999 | 4 |
| Deletion | Chr12 | 6577369 | 6577379 | 10 | |
| Deletion | Chr5 | 7563933 | 7563935 | 2 | |
| Deletion | Chr4 | 7780369 | 7780375 | 6 | |
| Deletion | Chr3 | 14413001 | 14424000 | 10999 | 3 |
| Deletion | Chr6 | 14606073 | 14606090 | 17 | |
| Deletion | Chr10 | 16043716 | 16043734 | 18 | |
| Deletion | Chr12 | 16706535 | 16706548 | 13 | |
| Deletion | Chr10 | 21713457 | 21713458 | 1 | |
| Deletion | Chr7 | 24430670 | 24430673 | 3 | LOC_Os07g40770 |
| Deletion | Chr7 | 24726296 | 24726305 | 9 | |
| Deletion | Chr1 | 26472527 | 26472529 | 2 | |
| Deletion | Chr3 | 29906675 | 29906680 | 5 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 13575829 | 13575834 | 6 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 12679762 | 12889414 | |
| Inversion | Chr8 | 12679773 | 12889412 | |
| Inversion | Chr3 | 13976321 | 14425556 | 2 |
| Inversion | Chr12 | 26808927 | 26983510 | LOC_Os12g43165 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4184545 | Chr3 | 19387886 | LOC_Os08g07460 |
| Translocation | Chr8 | 4184989 | Chr3 | 19387887 | LOC_Os08g07460 |
| Translocation | Chr5 | 9425509 | Chr4 | 4120469 | LOC_Os04g07740 |