Search Results
| Mutant Information |
|---|
| Mutant Name | FN3947-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3947-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21796666 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g38850 |
| SBS | Chr1 | 24676634 | A-G | HET | ||
| SBS | Chr1 | 29174464 | C-T | HET | ||
| SBS | Chr1 | 36412727 | A-G | HET | ||
| SBS | Chr2 | 3161319 | G-T | HET | ||
| SBS | Chr2 | 3528613 | G-A | HET | ||
| SBS | Chr2 | 34444746 | A-G | HET | ||
| SBS | Chr2 | 35467640 | T-C | HET | ||
| SBS | Chr3 | 30019404 | G-A | Homo | ||
| SBS | Chr3 | 31895019 | A-T | Homo | ||
| SBS | Chr3 | 31895020 | G-A | Homo | ||
| SBS | Chr4 | 18925635 | T-C | Homo | ||
| SBS | Chr4 | 26898581 | T-C | HET | ||
| SBS | Chr5 | 2431406 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g05010 |
| SBS | Chr5 | 28602376 | G-T | HET | ||
| SBS | Chr6 | 2153645 | G-A | Homo | ||
| SBS | Chr6 | 2153646 | C-A | Homo | ||
| SBS | Chr6 | 2153647 | A-G | Homo | ||
| SBS | Chr7 | 9633369 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g16450 |
| SBS | Chr7 | 9855254 | A-G | HET | ||
| SBS | Chr7 | 21528869 | G-T | HET | ||
| SBS | Chr8 | 3985517 | C-T | HET | ||
| SBS | Chr8 | 4923119 | C-T | HET | ||
| SBS | Chr8 | 10426774 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g17020 |
| SBS | Chr9 | 4237917 | C-T | Homo | ||
| SBS | Chr9 | 16396294 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g26970 |
| SBS | Chr10 | 7305055 | A-G | HET | ||
| SBS | Chr10 | 15237617 | A-T | HET | ||
| SBS | Chr10 | 22748849 | C-A | HET | ||
| SBS | Chr11 | 10671606 | A-T | HET | ||
| SBS | Chr12 | 18892097 | T-C | Homo | ||
| SBS | Chr12 | 23702165 | T-C | HET | ||
| SBS | Chr12 | 25595387 | G-A | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 45642 | 45643 | 1 | |
| Deletion | Chr12 | 2482333 | 2482337 | 4 | |
| Deletion | Chr3 | 3297697 | 3297702 | 5 | LOC_Os03g06550 |
| Deletion | Chr7 | 8719793 | 8719796 | 3 | |
| Deletion | Chr9 | 9296459 | 9296460 | 1 | |
| Deletion | Chr11 | 12889897 | 12889910 | 13 | |
| Deletion | Chr9 | 15168413 | 15168423 | 10 | LOC_Os09g25330 |
| Deletion | Chr12 | 20649407 | 20649413 | 6 | |
| Deletion | Chr11 | 22328330 | 22328333 | 3 | |
| Deletion | Chr8 | 23085069 | 23085073 | 4 | |
| Deletion | Chr7 | 23425157 | 23425158 | 1 | |
| Deletion | Chr3 | 25398526 | 25398534 | 8 | |
| Deletion | Chr4 | 25547498 | 25547502 | 4 | |
| Deletion | Chr5 | 26237371 | 26237373 | 2 | |
| Deletion | Chr7 | 28454673 | 28454679 | 6 | LOC_Os07g47590 |
| Deletion | Chr1 | 28678492 | 28678493 | 1 | |
| Deletion | Chr3 | 31652738 | 31652756 | 18 | |
| Deletion | Chr1 | 38092134 | 38092139 | 5 | |
| Deletion | Chr1 | 39565550 | 39565551 | 1 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 28374366 | 28374366 | 1 | |
| Insertion | Chr6 | 23850066 | 23850067 | 2 | |
| Insertion | Chr11 | 14431284 | 14431286 | 3 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 8280768 | Chr6 | 11647977 | |
| Translocation | Chr11 | 24619070 | Chr6 | 23049852 | 2 |