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| Mutant Information |
|---|
| Mutant Name | FN3948-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3948-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16695562 | C-T | Homo | ||
| SBS | Chr1 | 19038878 | T-A | HET | ||
| SBS | Chr10 | 14441079 | G-A | HET | ||
| SBS | Chr11 | 10378174 | G-A | Homo | ||
| SBS | Chr11 | 10819701 | C-T | Homo | ||
| SBS | Chr11 | 19058067 | T-A | Homo | ||
| SBS | Chr2 | 14672654 | C-A | HET | ||
| SBS | Chr2 | 6537604 | A-G | HET | ||
| SBS | Chr2 | 7282322 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g13580 |
| SBS | Chr2 | 8560582 | T-C | HET | ||
| SBS | Chr3 | 13506049 | C-A | Homo | ||
| SBS | Chr3 | 13506051 | G-T | Homo | ||
| SBS | Chr3 | 14921982 | G-C | HET | ||
| SBS | Chr3 | 15366141 | C-T | HET | ||
| SBS | Chr3 | 16626540 | A-G | HET | ||
| SBS | Chr3 | 19678621 | C-G | HET | ||
| SBS | Chr3 | 22876696 | G-A | HET | ||
| SBS | Chr3 | 23765606 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g42660 |
| SBS | Chr3 | 30810205 | A-T | HET | ||
| SBS | Chr4 | 23381239 | G-A | Homo | ||
| SBS | Chr4 | 30923984 | T-C | HET | ||
| SBS | Chr5 | 11304758 | G-A | HET | ||
| SBS | Chr5 | 11304759 | G-A | HET | ||
| SBS | Chr5 | 5154448 | C-A | Homo | ||
| SBS | Chr7 | 13280263 | A-T | Homo | ||
| SBS | Chr7 | 20264247 | A-G | HET | ||
| SBS | Chr8 | 11002016 | G-A | Homo | ||
| SBS | Chr8 | 18644761 | C-A | HET | ||
| SBS | Chr8 | 7170581 | C-T | HET | ||
| SBS | Chr8 | 9601011 | G-A | Homo | ||
| SBS | Chr9 | 10496306 | T-A | HET | ||
| SBS | Chr9 | 18848064 | C-T | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 4852968 | 4852969 | 1 | |
| Deletion | Chr5 | 6882378 | 6882394 | 16 | |
| Deletion | Chr1 | 7593515 | 7593516 | 1 | |
| Deletion | Chr5 | 7833166 | 7833167 | 1 | |
| Deletion | Chr5 | 9390192 | 9390198 | 6 | |
| Deletion | Chr7 | 10170175 | 10170180 | 5 | |
| Deletion | Chr1 | 13217848 | 13217849 | 1 | LOC_Os01g23530 |
| Deletion | Chr2 | 13944608 | 13944614 | 6 | |
| Deletion | Chr6 | 17373121 | 17373123 | 2 | |
| Deletion | Chr4 | 19472304 | 19472306 | 2 | |
| Deletion | Chr6 | 21541340 | 21541342 | 2 | LOC_Os06g36650 |
| Deletion | Chr3 | 22416274 | 22416285 | 11 | |
| Deletion | Chr2 | 24500051 | 24500054 | 3 | |
| Deletion | Chr6 | 30176295 | 30176325 | 30 | |
| Deletion | Chr4 | 35181086 | 35181105 | 19 | |
| Deletion | Chr1 | 35691558 | 35691577 | 19 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 1709686 | 1709687 | 2 | |
| Insertion | Chr7 | 16990876 | 16990974 | 99 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 3144417 | 3221856 | LOC_Os09g06634 |
| Inversion | Chr9 | 3144421 | 3221992 | LOC_Os09g06634 |
| Inversion | Chr3 | 7822267 | 8019797 | LOC_Os03g14380 |
| Inversion | Chr3 | 7822280 | 8019807 | LOC_Os03g14380 |
| Inversion | Chr9 | 9554319 | 10547328 | LOC_Os09g17190 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1241762 | Chr1 | 39841277 | |
| Translocation | Chr7 | 16928313 | Chr4 | 6466726 |