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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13403924	C-A	HET	INTERGENIC
SBS	Chr1	28169762	T-C	HET	INTRON
SBS	Chr1	36493549	C-T	HOMO	INTERGENIC
SBS	Chr12	12659043	G-C	HET	INTERGENIC
SBS	Chr12	18053197	G-T	HOMO	INTERGENIC
SBS	Chr12	8174410	G-A	HOMO	INTERGENIC
SBS	Chr2	10550495	G-T	HET	INTRON
SBS	Chr2	10550496	A-T	HET	INTRON
SBS	Chr2	10806541	G-T	HET	INTRON
SBS	Chr2	23856293	A-C	HET	INTRON
SBS	Chr3	10591478	G-T	HET	UTR_3_PRIME
SBS	Chr3	2011575	A-T	HET	UTR_3_PRIME
SBS	Chr3	31418773	C-G	HOMO	INTERGENIC
SBS	Chr3	4608860	G-T	HOMO	INTRON
SBS	Chr4	17156985	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g28940
SBS	Chr4	27144762	G-A	HOMO	INTERGENIC
SBS	Chr4	30048319	T-C	HOMO	INTRON
SBS	Chr4	33374061	T-A	HOMO	INTERGENIC
SBS	Chr4	7683409	C-T	HET	INTRON
SBS	Chr5	11901912	A-G	HET	INTERGENIC
SBS	Chr5	15461838	G-A	HET	INTERGENIC
SBS	Chr6	12239577	T-A	HOMO	INTRON
SBS	Chr6	12239578	C-A	HOMO	INTRON
SBS	Chr6	16203508	C-T	HOMO	INTERGENIC
SBS	Chr7	17031294	G-A	HET	INTRON
SBS	Chr9	14680723	C-A	HET	INTRON
SBS	Chr9	7933990	A-T	HET	SYNONYMOUS_CODING

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3080646	3080660	14
Deletion	Chr10	3619893	3619903	10
Deletion	Chr4	10300376	10300380	4
Deletion	Chr9	11252103	11252104	1
Deletion	Chr3	12390454	12390484	30	LOC_Os03g21700
Deletion	Chr12	14217894	14217904	10
Deletion	Chr3	14574312	14574316	4
Deletion	Chr3	14647103	14647133	30
Deletion	Chr6	16173067	16173069	2
Deletion	Chr6	23022474	23022480	6
Deletion	Chr2	23620001	23806000	186000	37
Deletion	Chr12	25476006	25476051	45
Deletion	Chr5	25506253	25506255	2
Deletion	Chr6	25889473	25889475	2
Deletion	Chr12	26551242	26551246	4
Deletion	Chr4	27753065	27753066	1
Deletion	Chr2	30652151	30652161	10
Deletion	Chr1	37178040	37178048	8
Deletion	Chr1	40737181	40737190	9

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	18552323	18552324	2
Insertion	Chr3	7430611	7430611	1
Insertion	Chr4	10541808	10541828	21	LOC_Os04g18980
Insertion	Chr4	26251100	26251100	1	LOC_Os04g44320
Insertion	Chr4	29415694	29415694	1
Insertion	Chr6	19413111	19413112	2
Insertion	Chr8	10173562	10173563	2
Insertion	Chr8	16622730	16622731	2
Insertion	Chr8	3045503	3045503	1

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	5096236	Chr2	3121940

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