Search Results
| Mutant Information |
|---|
| Mutant Name | FN3950-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3950-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3597388 | G-C | HET | ||
| SBS | Chr1 | 24610573 | G-C | HET | ||
| SBS | Chr1 | 31308817 | C-A | HET | ||
| SBS | Chr2 | 10120007 | C-T | HET | ||
| SBS | Chr2 | 23198537 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g38370 |
| SBS | Chr2 | 26304188 | T-G | Homo | ||
| SBS | Chr2 | 35197167 | C-T | Homo | ||
| SBS | Chr3 | 3542546 | A-C | Homo | ||
| SBS | Chr3 | 20917016 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g37720 |
| SBS | Chr4 | 1687104 | C-T | Homo | ||
| SBS | Chr4 | 18390749 | G-A | HET | ||
| SBS | Chr4 | 23624265 | G-T | HET | ||
| SBS | Chr5 | 8664270 | C-T | Homo | ||
| SBS | Chr5 | 14730140 | A-G | HET | ||
| SBS | Chr5 | 17608686 | A-C | HET | ||
| SBS | Chr5 | 18742228 | G-A | HET | ||
| SBS | Chr5 | 21653156 | G-A | HET | ||
| SBS | Chr6 | 11625936 | C-A | HET | ||
| SBS | Chr7 | 2916570 | C-G | Homo | ||
| SBS | Chr7 | 6548807 | G-A | HET | ||
| SBS | Chr7 | 8404042 | C-T | HET | ||
| SBS | Chr7 | 9197336 | A-T | HET | ||
| SBS | Chr7 | 14099566 | C-T | HET | ||
| SBS | Chr8 | 6253784 | T-C | Homo | ||
| SBS | Chr8 | 6762161 | C-T | HET | ||
| SBS | Chr8 | 9451882 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g15545 |
| SBS | Chr8 | 9525027 | C-T | Homo | ||
| SBS | Chr8 | 16269601 | C-T | HET | ||
| SBS | Chr9 | 3817144 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g07610 |
| SBS | Chr9 | 7995947 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g13680 |
| SBS | Chr9 | 22227209 | T-C | Homo | ||
| SBS | Chr10 | 5949170 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g10760 |
| SBS | Chr10 | 15729528 | G-C | HET | ||
| SBS | Chr10 | 17014807 | A-G | HET | ||
| SBS | Chr11 | 10064124 | C-T | HET | ||
| SBS | Chr11 | 24643436 | A-C | Homo | ||
| SBS | Chr12 | 12106551 | A-T | Homo | ||
| SBS | Chr12 | 15647255 | C-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2056785 | 2056786 | 1 | LOC_Os12g04810 |
| Deletion | Chr1 | 3957627 | 3957628 | 1 | |
| Deletion | Chr10 | 7751505 | 7751515 | 10 | |
| Deletion | Chr12 | 12446942 | 12446944 | 2 | |
| Deletion | Chr10 | 14480542 | 14480543 | 1 | |
| Deletion | Chr2 | 17358600 | 17358606 | 6 | |
| Deletion | Chr8 | 17928317 | 17928332 | 15 | LOC_Os08g29240 |
| Deletion | Chr6 | 17969507 | 17969531 | 24 | |
| Deletion | Chr4 | 20907397 | 20907398 | 1 | |
| Deletion | Chr7 | 24598148 | 24598152 | 4 | |
| Deletion | Chr6 | 26661752 | 26661753 | 1 | LOC_Os06g44200 |
| Deletion | Chr5 | 28921371 | 28921381 | 10 | |
| Deletion | Chr3 | 29025904 | 29025905 | 1 | |
| Deletion | Chr1 | 36210564 | 36210567 | 3 | LOC_Os01g62520 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 12136376 | 12136376 | 1 | LOC_Os02g20570 |
| Insertion | Chr10 | 11333763 | 11333763 | 1 | LOC_Os10g21950 |
| Insertion | Chr2 | 9367128 | 9367128 | 1 | |
| Insertion | Chr10 | 15399535 | 15399927 | 393 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 23548341 | 23876164 | LOC_Os02g38970 |
| Inversion | Chr2 | 23548345 | 23876167 | LOC_Os02g38970 |
| Inversion | Chr2 | 29354090 | 30214232 | LOC_Os02g47970 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 118854 | Chr8 | 10074687 | |
| Translocation | Chr10 | 118859 | Chr8 | 10073474 | |
| Translocation | Chr12 | 5179131 | Chr8 | 15024737 | |
| Translocation | Chr5 | 5528660 | Chr2 | 17246351 | LOC_Os02g29130 |
| Translocation | Chr8 | 9911837 | Chr1 | 19823117 |