Search Results
| Mutant Information |
|---|
| Mutant Name | FN3951-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3951-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2787232 | T-A | HET | ||
| SBS | Chr1 | 8057757 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g14380 |
| SBS | Chr1 | 11079631 | G-A | HET | ||
| SBS | Chr1 | 21266956 | T-C | HET | ||
| SBS | Chr2 | 3959736 | T-A | HET | ||
| SBS | Chr2 | 34419093 | G-T | HET | ||
| SBS | Chr3 | 24093361 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g43200 |
| SBS | Chr3 | 24130542 | T-A | HET | ||
| SBS | Chr3 | 28011314 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g49170 |
| SBS | Chr4 | 2988740 | G-C | HET | ||
| SBS | Chr4 | 21574524 | C-T | HET | ||
| SBS | Chr5 | 10808892 | C-T | HET | ||
| SBS | Chr5 | 15595225 | G-C | HET | ||
| SBS | Chr5 | 22043176 | G-A | HET | ||
| SBS | Chr6 | 12087306 | T-C | HET | ||
| SBS | Chr6 | 12116328 | C-T | HET | ||
| SBS | Chr6 | 12116335 | A-T | HET | ||
| SBS | Chr6 | 30635189 | C-T | HET | ||
| SBS | Chr7 | 2015875 | A-T | HET | ||
| SBS | Chr7 | 15969326 | G-C | HET | ||
| SBS | Chr7 | 22978637 | A-C | Homo | ||
| SBS | Chr11 | 11156048 | C-T | HET | ||
| SBS | Chr11 | 13448568 | G-T | HET | ||
| SBS | Chr11 | 14974412 | A-G | HET | ||
| SBS | Chr11 | 15114324 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26390 |
| SBS | Chr11 | 26329660 | A-G | Homo | ||
| SBS | Chr12 | 21505600 | T-C | HET | ||
| SBS | Chr12 | 21588750 | C-T | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1930964 | 1930967 | 3 | LOC_Os12g04540 |
| Deletion | Chr1 | 8050506 | 8050510 | 4 | LOC_Os01g14370 |
| Deletion | Chr4 | 8388050 | 8388052 | 2 | |
| Deletion | Chr9 | 11645554 | 11645624 | 70 | |
| Deletion | Chr4 | 16821270 | 16821283 | 13 | |
| Deletion | Chr7 | 18636909 | 18636912 | 3 | LOC_Os07g31450 |
| Deletion | Chr6 | 20083001 | 20148000 | 64999 | 17 |
| Deletion | Chr6 | 20153001 | 20236000 | 82999 | 11 |
| Deletion | Chr6 | 20243001 | 20291000 | 47999 | 7 |
| Deletion | Chr8 | 20685725 | 20685733 | 8 | |
| Deletion | Chr3 | 21913663 | 21913664 | 1 | |
| Deletion | Chr11 | 26627119 | 26627127 | 8 | LOC_Os11g44060 |
| Deletion | Chr11 | 26778942 | 26778950 | 8 | |
| Deletion | Chr6 | 27482541 | 27482552 | 11 | |
| Deletion | Chr4 | 28150244 | 28150245 | 1 | |
| Deletion | Chr1 | 29819018 | 29819019 | 1 | LOC_Os01g51860 |
| Deletion | Chr1 | 30916097 | 30916105 | 8 | LOC_Os01g53779 |
| Deletion | Chr1 | 42603801 | 42603802 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 20737222 | 20737222 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 16682478 | 17360838 | 2 |
| Inversion | Chr2 | 16899701 | 17360902 | LOC_Os02g29230 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 5026204 | Chr8 | 3815136 | |
| Translocation | Chr9 | 8289840 | Chr6 | 11646593 | |
| Translocation | Chr10 | 12580401 | Chr8 | 14922478 | |
| Translocation | Chr8 | 19840594 | Chr6 | 20697705 | |
| Translocation | Chr8 | 19840599 | Chr6 | 20290757 | |
| Translocation | Chr11 | 22579375 | Chr8 | 3761939 | LOC_Os11g38070 |