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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24521762	G-A	HET
SBS	Chr1	36461796	G-A	HET
SBS	Chr10	15395234	G-A	HET
SBS	Chr10	16145553	G-A	HET
SBS	Chr11	3881575	A-T	HET
SBS	Chr11	4581884	G-C	HET
SBS	Chr11	8105714	C-T	HET
SBS	Chr11	8764375	G-A	HET
SBS	Chr12	14462291	G-T	HET
SBS	Chr12	17040752	A-T	HET
SBS	Chr12	19741952	G-A	Homo
SBS	Chr2	16824624	G-A	Homo	STOP_GAINED	LOC_Os02g28450
SBS	Chr4	17573573	G-A	Homo
SBS	Chr4	23960344	C-T	Homo
SBS	Chr4	5830592	T-C	Homo
SBS	Chr5	10020309	A-G	HET
SBS	Chr5	19474813	G-A	Homo
SBS	Chr5	22503449	T-A	Homo
SBS	Chr5	4489236	T-C	HET
SBS	Chr6	12517288	A-T	HET
SBS	Chr6	15220357	T-C	HET
SBS	Chr6	31147120	T-A	Homo
SBS	Chr6	9574330	C-T	HET
SBS	Chr7	17311286	T-C	Homo
SBS	Chr7	26742489	A-T	HET
SBS	Chr7	7904224	C-A	Homo
SBS	Chr8	13443959	C-T	HET
SBS	Chr8	13443961	C-A	HET
SBS	Chr8	7173549	G-A	HET
SBS	Chr9	9556202	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g15660

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3152157	3152159	2
Deletion	Chr3	9905349	9905350	1	LOC_Os03g17800
Deletion	Chr6	10464198	10464205	7
Deletion	Chr7	17243512	17243537	25
Deletion	Chr9	20781170	20781171	1
Deletion	Chr9	21695053	21695065	12
Deletion	Chr4	23075325	23075329	4
Deletion	Chr3	26276001	26288000	11999	4
Deletion	Chr4	30252529	30252534	5
Deletion	Chr1	35205141	35205156	15

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	18289770	18289770	1
Insertion	Chr1	26953566	26953566	1
Insertion	Chr2	30538115	30538118	4
Insertion	Chr6	16047129	16047623	495
Insertion	Chr6	6706916	6706917	2
Insertion	Chr8	13064848	13064865	18
Insertion	Chr8	13065401	13065401	1
Insertion	Chr9	228192	228192	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	21852384	22653196	2
Inversion	Chr3	22653335	23270260	LOC_Os03g40720
Inversion	Chr3	26288022	26299367	LOC_Os03g46470
Inversion	Chr1	40710123	40776940	2
Inversion	Chr1	40710132	40776942	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4886676	Chr3	10280805	LOC_Os03g18350
Translocation	Chr5	11521056	Chr1	19025462
Translocation	Chr8	12013952	Chr3	23147739	LOC_Os08g20050
Translocation	Chr6	13507643	Chr1	24726876
Translocation	Chr9	13810224	Chr2	19045981	LOC_Os02g32250
Translocation	Chr9	13810231	Chr2	19038530	LOC_Os02g32230

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