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| Mutant Information |
|---|
| Mutant Name | FN3957-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3957-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20471162 | C-T | HET | ||
| SBS | Chr10 | 21744131 | A-T | Homo | ||
| SBS | Chr11 | 2352549 | C-T | HET | ||
| SBS | Chr12 | 10402300 | G-A | Homo | ||
| SBS | Chr12 | 2103275 | C-T | Homo | ||
| SBS | Chr12 | 24034890 | G-A | Homo | SPLICE_SITE_DONOR | LOC_Os12g39070 |
| SBS | Chr3 | 11502902 | G-A | HET | ||
| SBS | Chr3 | 18893117 | T-G | HET | ||
| SBS | Chr3 | 18893123 | C-T | HET | ||
| SBS | Chr3 | 24802105 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g44140 |
| SBS | Chr3 | 2893819 | G-A | HET | ||
| SBS | Chr3 | 9847972 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g17700 |
| SBS | Chr4 | 20657314 | C-G | HET | ||
| SBS | Chr4 | 30851457 | G-A | Homo | ||
| SBS | Chr5 | 14288320 | T-A | HET | ||
| SBS | Chr6 | 2793833 | C-T | HET | ||
| SBS | Chr6 | 4173327 | C-T | HET | ||
| SBS | Chr7 | 6621453 | G-A | Homo | ||
| SBS | Chr8 | 24503217 | A-G | HET | ||
| SBS | Chr8 | 7449117 | A-T | HET | ||
| SBS | Chr8 | 8175017 | G-T | HET | ||
| SBS | Chr9 | 10812666 | T-C | HET | ||
| SBS | Chr9 | 5273227 | C-A | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1645640 | 1645645 | 5 | LOC_Os03g03700 |
| Deletion | Chr4 | 4958227 | 4958531 | 304 | LOC_Os04g09330 |
| Deletion | Chr8 | 7051001 | 7309000 | 257999 | 36 |
| Deletion | Chr12 | 9424544 | 9424545 | 1 | |
| Deletion | Chr12 | 19903044 | 19903068 | 24 | |
| Deletion | Chr3 | 22171598 | 22171600 | 2 | |
| Deletion | Chr7 | 23483524 | 23483527 | 3 | |
| Deletion | Chr6 | 23549345 | 23549362 | 17 | LOC_Os06g39650 |
| Deletion | Chr8 | 25193353 | 25193354 | 1 | LOC_Os08g39800 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 15789344 | 15789345 | 2 | |
| Insertion | Chr3 | 16078768 | 16078769 | 2 | |
| Insertion | Chr7 | 174804 | 174804 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 16346589 | 16476481 | 2 |
| Inversion | Chr11 | 16347387 | 16476492 | 2 |
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 1331074 | Chr7 | 28606608 | 2 |
| Translocation | Chr8 | 1601035 | Chr5 | 13509472 | LOC_Os08g03420 |
| Translocation | Chr12 | 2147144 | Chr11 | 5073923 | |
| Translocation | Chr9 | 3016736 | Chr5 | 13509464 | LOC_Os09g06400 |
| Translocation | Chr5 | 4928572 | Chr4 | 936646 | |
| Translocation | Chr12 | 11388006 | Chr7 | 1638446 | LOC_Os07g03910 |
| Translocation | Chr8 | 15003135 | Chr5 | 4928630 | LOC_Os08g24770 |
| Translocation | Chr5 | 16271878 | Chr4 | 29776678 | 2 |
| Translocation | Chr5 | 16271901 | Chr4 | 29787429 | LOC_Os05g27880 |
| Translocation | Chr11 | 18033977 | Chr1 | 31269142 | |
| Translocation | Chr4 | 29787445 | Chr1 | 41891865 | |
| Translocation | Chr4 | 29787799 | Chr1 | 41891863 |