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| Mutant Information |
|---|
| Mutant Name | FN3958-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3958-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18248169 | G-A | HET | ||
| SBS | Chr1 | 3905569 | T-A | HET | ||
| SBS | Chr1 | 7481734 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g13430 |
| SBS | Chr11 | 10483476 | C-G | HET | ||
| SBS | Chr11 | 1135283 | A-T | HET | ||
| SBS | Chr11 | 20985275 | C-T | HET | ||
| SBS | Chr12 | 7957657 | C-T | HET | ||
| SBS | Chr2 | 26420267 | G-T | HET | ||
| SBS | Chr2 | 34306362 | A-G | HET | ||
| SBS | Chr3 | 21285008 | A-C | HET | ||
| SBS | Chr3 | 27129665 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g47790 |
| SBS | Chr3 | 28481303 | A-T | HET | ||
| SBS | Chr3 | 35606611 | A-T | HET | ||
| SBS | Chr3 | 6412368 | A-T | HET | ||
| SBS | Chr4 | 11023858 | G-A | Homo | ||
| SBS | Chr4 | 31419621 | A-G | HET | ||
| SBS | Chr4 | 7520178 | T-C | Homo | ||
| SBS | Chr5 | 10242608 | T-G | HET | ||
| SBS | Chr6 | 10677446 | C-T | HET | ||
| SBS | Chr6 | 10677447 | G-T | HET | ||
| SBS | Chr6 | 31105504 | A-G | Homo | ||
| SBS | Chr6 | 7281398 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g13240 |
| SBS | Chr6 | 9141568 | G-T | HET | ||
| SBS | Chr8 | 13320931 | G-A | HET | ||
| SBS | Chr8 | 4138964 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g07380 |
| SBS | Chr8 | 7459415 | C-T | HET | ||
| SBS | Chr8 | 85853 | C-G | HET | ||
| SBS | Chr9 | 6804786 | G-C | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 715564 | 715565 | 1 | LOC_Os05g02240 |
| Deletion | Chr11 | 4093001 | 4147000 | 53999 | 7 |
| Deletion | Chr6 | 4341251 | 4341255 | 4 | LOC_Os06g08710 |
| Deletion | Chr9 | 5193001 | 5211000 | 17999 | 2 |
| Deletion | Chr9 | 5859592 | 5859605 | 13 | |
| Deletion | Chr9 | 8405734 | 8405735 | 1 | |
| Deletion | Chr4 | 8805498 | 8805499 | 1 | LOC_Os04g16220 |
| Deletion | Chr4 | 12025728 | 12025740 | 12 | |
| Deletion | Chr4 | 12492465 | 12492473 | 8 | LOC_Os04g22060 |
| Deletion | Chr11 | 13913001 | 13931000 | 17999 | 3 |
| Deletion | Chr6 | 16101001 | 16112000 | 10999 | LOC_Os06g28340 |
| Deletion | Chr8 | 16736218 | 16736220 | 2 | |
| Deletion | Chr9 | 19372721 | 19372724 | 3 | |
| Deletion | Chr10 | 19750613 | 19750614 | 1 | |
| Deletion | Chr8 | 21916095 | 21916096 | 1 | |
| Deletion | Chr8 | 28401472 | 28401490 | 18 | |
| Deletion | Chr1 | 31689334 | 31689337 | 3 | |
| Deletion | Chr2 | 32216566 | 32216571 | 5 | |
| Deletion | Chr1 | 41324818 | 41324820 | 2 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 29865786 | 29865791 | 6 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 9743307 | 9847808 | 2 |
| Inversion | Chr6 | 9744061 | 9847819 | LOC_Os06g16980 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 10140352 | Chr4 | 27965899 | LOC_Os04g47100 |
| Translocation | Chr7 | 10246963 | Chr5 | 22423668 | |
| Translocation | Chr11 | 26356610 | Chr10 | 19108742 |