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| Mutant Information |
|---|
| Mutant Name | FN3959-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3959-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 3080209 | A-G | HET | ||
| SBS | Chr10 | 4624216 | G-A | HET | ||
| SBS | Chr10 | 7655181 | T-C | HET | ||
| SBS | Chr11 | 15243248 | C-G | Homo | ||
| SBS | Chr12 | 11109937 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g19140 |
| SBS | Chr12 | 20724706 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g34180 |
| SBS | Chr3 | 24921357 | C-T | HET | ||
| SBS | Chr3 | 3431824 | C-G | Homo | ||
| SBS | Chr3 | 7173514 | A-G | HET | ||
| SBS | Chr4 | 33172024 | C-T | Homo | ||
| SBS | Chr4 | 35460686 | A-T | Homo | ||
| SBS | Chr5 | 28661491 | A-T | Homo | ||
| SBS | Chr6 | 14148435 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g24170 |
| SBS | Chr6 | 24297880 | T-A | Homo | ||
| SBS | Chr7 | 6144357 | C-T | Homo | ||
| SBS | Chr8 | 25515553 | G-C | HET | ||
| SBS | Chr9 | 13197653 | A-T | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2038263 | 2038264 | 1 | |
| Deletion | Chr7 | 2296536 | 2296537 | 1 | |
| Deletion | Chr6 | 6007045 | 6007047 | 2 | |
| Deletion | Chr5 | 8934637 | 8934642 | 5 | |
| Deletion | Chr11 | 12099993 | 12099996 | 3 | |
| Deletion | Chr7 | 17813296 | 17813297 | 1 | |
| Deletion | Chr10 | 22715383 | 22715384 | 1 | LOC_Os10g42202 |
| Deletion | Chr5 | 25494143 | 25494156 | 13 | |
| Deletion | Chr11 | 25740024 | 25740027 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 17463353 | 17463354 | 2 | |
| Insertion | Chr6 | 16047166 | 16047305 | 140 | |
| Insertion | Chr8 | 12244980 | 12244980 | 1 | |
| Insertion | Chr9 | 15321297 | 15321298 | 2 | LOC_Os09g25540 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 567158 | 981584 | LOC_Os07g02710 |
| Inversion | Chr7 | 567166 | 984393 | |
| Inversion | Chr4 | 19216413 | 20062184 | LOC_Os04g33140 |
| Inversion | Chr4 | 19216421 | 20062199 | LOC_Os04g33140 |
| Inversion | Chr12 | 20497943 | 20498121 | LOC_Os12g33956 |
Translocations: 16
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 84922 | Chr6 | 22815088 | |
| Translocation | Chr11 | 2499158 | Chr8 | 19698850 | |
| Translocation | Chr3 | 6827423 | Chr1 | 24700302 | LOC_Os03g12760 |
| Translocation | Chr3 | 6827424 | Chr1 | 24701068 | LOC_Os03g12760 |
| Translocation | Chr11 | 7332257 | Chr10 | 1903311 | LOC_Os11g13390 |
| Translocation | Chr8 | 8401682 | Chr4 | 22687688 | |
| Translocation | Chr9 | 12257976 | Chr1 | 3225357 | LOC_Os01g06790 |
| Translocation | Chr9 | 19064980 | Chr7 | 17464478 | |
| Translocation | Chr3 | 19591561 | Chr2 | 16044229 | LOC_Os03g35340 |
| Translocation | Chr11 | 19842301 | Chr1 | 19348947 | |
| Translocation | Chr8 | 21396701 | Chr1 | 24700298 | |
| Translocation | Chr8 | 21397523 | Chr1 | 24696908 | LOC_Os01g43220 |
| Translocation | Chr11 | 26140449 | Chr7 | 13447415 | LOC_Os11g43320 |
| Translocation | Chr11 | 26140453 | Chr7 | 13446431 | LOC_Os11g43320 |
| Translocation | Chr11 | 26257591 | Chr4 | 6930044 | |
| Translocation | Chr3 | 34340304 | Chr2 | 397595 | 2 |