Search Results
| Mutant Information |
|---|
| Mutant Name | FN3965-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3965-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5555862 | T-G | Homo | ||
| SBS | Chr1 | 19924508 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g36000 |
| SBS | Chr1 | 24008893 | G-T | HET | ||
| SBS | Chr2 | 21129918 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g35180 |
| SBS | Chr2 | 29136404 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g47670 |
| SBS | Chr3 | 4751712 | A-C | Homo | ||
| SBS | Chr3 | 17694455 | G-A | Homo | ||
| SBS | Chr3 | 31583816 | T-G | HET | ||
| SBS | Chr4 | 32224692 | C-T | HET | ||
| SBS | Chr6 | 20980666 | T-C | HET | ||
| SBS | Chr6 | 24549609 | C-A | HET | ||
| SBS | Chr7 | 19044128 | T-C | Homo | ||
| SBS | Chr7 | 19156138 | C-T | Homo | ||
| SBS | Chr7 | 28114110 | A-G | Homo | ||
| SBS | Chr8 | 8807498 | C-T | HET | ||
| SBS | Chr8 | 12596730 | A-G | HET | ||
| SBS | Chr8 | 13678345 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g22750 |
| SBS | Chr8 | 19974140 | T-A | HET | STOP_GAINED | LOC_Os08g32220 |
| SBS | Chr9 | 21117664 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g36610 |
| SBS | Chr10 | 6971988 | G-A | Homo | ||
| SBS | Chr11 | 8187127 | A-G | Homo | ||
| SBS | Chr12 | 12140437 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g21600 |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 621432 | 621441 | 9 | |
| Deletion | Chr11 | 1967437 | 1967441 | 4 | |
| Deletion | Chr12 | 2317001 | 2353000 | 35999 | 7 |
| Deletion | Chr12 | 2508110 | 2508116 | 6 | |
| Deletion | Chr6 | 3228154 | 3228160 | 6 | LOC_Os06g06830 |
| Deletion | Chr2 | 6327510 | 6327513 | 3 | |
| Deletion | Chr7 | 10275527 | 10275529 | 2 | |
| Deletion | Chr12 | 10966248 | 10966262 | 14 | |
| Deletion | Chr11 | 11930527 | 11930528 | 1 | LOC_Os11g20570 |
| Deletion | Chr1 | 15976001 | 16179000 | 202999 | 33 |
| Deletion | Chr1 | 16183001 | 16250000 | 66999 | 13 |
| Deletion | Chr1 | 16257001 | 16269000 | 11999 | 3 |
| Deletion | Chr1 | 16274001 | 16745000 | 470999 | 73 |
| Deletion | Chr12 | 16992742 | 16992743 | 1 | |
| Deletion | Chr5 | 18706226 | 18706251 | 25 | |
| Deletion | Chr7 | 19124269 | 19124276 | 7 | |
| Deletion | Chr9 | 20065083 | 20065084 | 1 | LOC_Os09g33980 |
| Deletion | Chr8 | 22067317 | 22067320 | 3 | LOC_Os08g35030 |
| Deletion | Chr8 | 22086193 | 22086206 | 13 | |
| Deletion | Chr8 | 24102577 | 24102589 | 12 | |
| Deletion | Chr1 | 29201533 | 29201538 | 5 |
Insertions: 5
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 22657511 | 22773205 | 2 |
No Translocation