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| Mutant Information |
|---|
| Mutant Name | FN3966-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3966-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31292237 | G-A | HET | ||
| SBS | Chr1 | 33505054 | T-C | HET | ||
| SBS | Chr11 | 10187141 | T-C | HET | ||
| SBS | Chr11 | 13137958 | C-T | HET | ||
| SBS | Chr11 | 26313663 | G-A | HET | ||
| SBS | Chr12 | 12101945 | G-C | HET | ||
| SBS | Chr12 | 21077445 | C-T | HET | ||
| SBS | Chr4 | 10296154 | G-A | HET | ||
| SBS | Chr4 | 13181217 | C-A | HET | ||
| SBS | Chr4 | 21126807 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g34840 |
| SBS | Chr4 | 27051645 | G-A | HET | ||
| SBS | Chr5 | 14884050 | G-A | Homo | ||
| SBS | Chr5 | 21826308 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g37300 |
| SBS | Chr5 | 23157382 | G-A | Homo | ||
| SBS | Chr5 | 26499912 | G-A | Homo | ||
| SBS | Chr5 | 5745963 | C-T | Homo | ||
| SBS | Chr6 | 21553373 | T-A | Homo | ||
| SBS | Chr6 | 30084963 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g49730 |
| SBS | Chr6 | 5629345 | T-A | Homo | ||
| SBS | Chr7 | 23148259 | A-G | HET | ||
| SBS | Chr7 | 9440465 | G-T | HET | ||
| SBS | Chr8 | 10014304 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g16380 |
| SBS | Chr8 | 12470032 | C-A | Homo | SPLICE_SITE_DONOR | LOC_Os08g20770 |
| SBS | Chr8 | 23442468 | G-C | HET | ||
| SBS | Chr9 | 4287174 | G-T | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1896001 | 1909000 | 12999 | 2 |
| Deletion | Chr11 | 2475797 | 2475807 | 10 | |
| Deletion | Chr6 | 8217550 | 8217555 | 5 | LOC_Os06g14590 |
| Deletion | Chr8 | 11291677 | 11291678 | 1 | |
| Deletion | Chr4 | 11407019 | 11407024 | 5 | |
| Deletion | Chr8 | 16681441 | 16681447 | 6 | LOC_Os08g27320 |
| Deletion | Chr4 | 20706375 | 20706377 | 2 | |
| Deletion | Chr7 | 23142332 | 23142339 | 7 | |
| Deletion | Chr8 | 25096109 | 25096118 | 9 | |
| Deletion | Chr3 | 34488052 | 34488063 | 11 | LOC_Os03g60660 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 3060239 | 3060239 | 1 | |
| Insertion | Chr6 | 27160796 | 27160799 | 4 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 21719677 | 21726213 | |
| Inversion | Chr6 | 21719679 | 21726221 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1263497 | Chr3 | 517246 | LOC_Os07g03210 |
| Translocation | Chr9 | 8847555 | Chr3 | 21163519 | |
| Translocation | Chr9 | 9171551 | Chr3 | 21163493 | |
| Translocation | Chr11 | 9960755 | Chr10 | 18647685 | |
| Translocation | Chr3 | 19118828 | Chr1 | 17033333 | |
| Translocation | Chr6 | 19283438 | Chr1 | 17779578 | LOC_Os01g32410 |
| Translocation | Chr3 | 31068314 | Chr1 | 16252192 |