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| Mutant Information |
|---|
| Mutant Name | FN3967-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3967-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32570228 | A-G | Homo | ||
| SBS | Chr1 | 33947340 | G-A | HET | ||
| SBS | Chr1 | 37359889 | G-A | HET | ||
| SBS | Chr1 | 4860975 | G-A | HET | ||
| SBS | Chr10 | 19298228 | C-G | Homo | ||
| SBS | Chr11 | 13322619 | T-G | HET | ||
| SBS | Chr11 | 19129115 | A-T | HET | ||
| SBS | Chr11 | 22839130 | C-T | HET | ||
| SBS | Chr11 | 2622729 | C-T | HET | ||
| SBS | Chr11 | 26788099 | C-T | HET | ||
| SBS | Chr11 | 26788100 | A-T | HET | ||
| SBS | Chr12 | 13011612 | C-T | HET | ||
| SBS | Chr12 | 3545171 | G-T | Homo | ||
| SBS | Chr2 | 13791159 | C-A | Homo | ||
| SBS | Chr2 | 29485387 | C-T | HET | ||
| SBS | Chr3 | 13565552 | A-C | Homo | ||
| SBS | Chr3 | 1373209 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g03230 |
| SBS | Chr3 | 35229500 | G-A | HET | ||
| SBS | Chr4 | 12811071 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g22610 |
| SBS | Chr4 | 13621286 | T-C | HET | ||
| SBS | Chr4 | 16555722 | T-C | HET | ||
| SBS | Chr4 | 3446204 | T-G | HET | ||
| SBS | Chr4 | 7337687 | T-G | HET | ||
| SBS | Chr5 | 19942336 | T-C | HET | ||
| SBS | Chr6 | 2152480 | C-G | HET | ||
| SBS | Chr8 | 15953443 | C-A | Homo | ||
| SBS | Chr8 | 18386769 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g29930 |
| SBS | Chr8 | 23210763 | T-C | HET | ||
| SBS | Chr9 | 20429075 | A-T | HET | ||
| SBS | Chr9 | 22015889 | G-T | HET |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 652248 | 652250 | 2 | |
| Deletion | Chr6 | 929621 | 929632 | 11 | |
| Deletion | Chr9 | 2480076 | 2480097 | 21 | |
| Deletion | Chr5 | 2669508 | 2669512 | 4 | |
| Deletion | Chr11 | 3518703 | 3518707 | 4 | LOC_Os11g07060 |
| Deletion | Chr7 | 4369299 | 4369300 | 1 | |
| Deletion | Chr11 | 5779605 | 5779608 | 3 | LOC_Os11g10550 |
| Deletion | Chr1 | 8705019 | 8705021 | 2 | |
| Deletion | Chr5 | 9896867 | 9896869 | 2 | |
| Deletion | Chr10 | 9933653 | 9933654 | 1 | |
| Deletion | Chr6 | 12449279 | 12449292 | 13 | |
| Deletion | Chr2 | 16292316 | 16292337 | 21 | LOC_Os02g27520 |
| Deletion | Chr3 | 17367123 | 17367127 | 4 | LOC_Os03g30450 |
| Deletion | Chr5 | 18619695 | 18619697 | 2 | |
| Deletion | Chr5 | 19262707 | 19262719 | 12 | |
| Deletion | Chr7 | 25468362 | 25468390 | 28 | |
| Deletion | Chr5 | 26891890 | 26891910 | 20 | |
| Deletion | Chr11 | 26974552 | 26974570 | 18 | |
| Deletion | Chr3 | 32209935 | 32209940 | 5 | |
| Deletion | Chr2 | 35286872 | 35286874 | 2 | |
| Deletion | Chr1 | 42550001 | 42629000 | 78999 | 15 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 12880244 | 12880245 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 13943953 | 14294810 | 2 |
| Inversion | Chr11 | 13943959 | 14294812 | 2 |
No Translocation