Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3970-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3970-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26259834 | G-A | Homo | ||
| SBS | Chr1 | 27577500 | A-T | Homo | ||
| SBS | Chr11 | 22345029 | T-A | HET | ||
| SBS | Chr12 | 12909256 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g22870 |
| SBS | Chr12 | 15943162 | T-G | HET | ||
| SBS | Chr12 | 25577831 | G-T | HET | ||
| SBS | Chr2 | 32742089 | G-A | HET | ||
| SBS | Chr2 | 32742090 | G-A | HET | ||
| SBS | Chr3 | 16102576 | G-A | HET | ||
| SBS | Chr3 | 21399722 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g38560 |
| SBS | Chr3 | 22438069 | A-T | HET | ||
| SBS | Chr3 | 22438074 | G-T | HET | ||
| SBS | Chr3 | 28530689 | A-G | HET | ||
| SBS | Chr3 | 34821077 | G-A | HET | ||
| SBS | Chr3 | 3862206 | T-C | Homo | ||
| SBS | Chr4 | 12941713 | A-G | HET | ||
| SBS | Chr4 | 20648675 | G-T | HET | ||
| SBS | Chr4 | 22180827 | A-G | HET | ||
| SBS | Chr4 | 27622 | G-A | HET | ||
| SBS | Chr4 | 5983210 | A-G | HET | ||
| SBS | Chr5 | 10108394 | C-T | HET | ||
| SBS | Chr5 | 14401067 | G-A | HET | ||
| SBS | Chr5 | 16880766 | G-A | HET | ||
| SBS | Chr5 | 18924297 | A-G | Homo | ||
| SBS | Chr5 | 29358072 | G-A | Homo | ||
| SBS | Chr5 | 3367774 | T-C | HET | ||
| SBS | Chr5 | 4048336 | G-A | HET | ||
| SBS | Chr6 | 19642768 | A-G | HET | ||
| SBS | Chr6 | 20284009 | C-T | HET | ||
| SBS | Chr6 | 4169249 | A-T | HET | ||
| SBS | Chr7 | 20321540 | C-T | HET | ||
| SBS | Chr8 | 27071869 | G-T | Homo | ||
| SBS | Chr8 | 6878641 | T-C | HET | ||
| SBS | Chr9 | 14109855 | T-C | HET | ||
| SBS | Chr9 | 3688726 | G-A | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 5261024 | 5261028 | 4 | |
| Deletion | Chr4 | 7127616 | 7127617 | 1 | |
| Deletion | Chr4 | 9074791 | 9074796 | 5 | |
| Deletion | Chr12 | 11326436 | 11326446 | 10 | |
| Deletion | Chr12 | 11388001 | 11446000 | 57999 | 6 |
| Deletion | Chr9 | 18724948 | 18724957 | 9 | |
| Deletion | Chr11 | 22344224 | 22344225 | 1 | |
| Deletion | Chr8 | 24851572 | 24851576 | 4 | |
| Deletion | Chr8 | 25343815 | 25343820 | 5 | |
| Deletion | Chr6 | 26741598 | 26741599 | 1 | |
| Deletion | Chr4 | 28278665 | 28278880 | 215 | LOC_Os04g47650 |
| Deletion | Chr5 | 28519587 | 28519588 | 1 | |
| Deletion | Chr2 | 32978330 | 32978335 | 5 | |
| Deletion | Chr1 | 34872758 | 34872778 | 20 | |
| Deletion | Chr1 | 38784451 | 38784459 | 8 | LOC_Os01g66790 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 3391997 | 3391998 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 6641905 | 6671468 | LOC_Os11g12000 |
| Inversion | Chr12 | 11281803 | 11877710 | LOC_Os12g20340 |
| Inversion | Chr12 | 11353356 | 11880384 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 3212447 | Chr6 | 18136411 | LOC_Os06g31200 |
| Translocation | Chr12 | 11282637 | Chr4 | 294739 | |
| Translocation | Chr12 | 11347786 | Chr4 | 15227362 | |
| Translocation | Chr10 | 13120513 | Chr5 | 23573846 | |
| Translocation | Chr11 | 25898202 | Chr7 | 6132440 |