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| Mutant Information |
|---|
| Mutant Name | FN3971-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3971-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13850172 | C-A | HET | ||
| SBS | Chr1 | 1622446 | G-T | HET | ||
| SBS | Chr1 | 31996866 | T-C | HET | ||
| SBS | Chr1 | 40753260 | C-T | Homo | ||
| SBS | Chr10 | 6545688 | T-A | HET | ||
| SBS | Chr11 | 18836550 | C-T | HET | ||
| SBS | Chr11 | 8417470 | C-A | HET | ||
| SBS | Chr12 | 11719746 | T-C | HET | ||
| SBS | Chr12 | 15542736 | A-G | HET | ||
| SBS | Chr12 | 19728619 | A-T | HET | ||
| SBS | Chr12 | 3891925 | T-A | Homo | ||
| SBS | Chr2 | 10669401 | A-G | HET | ||
| SBS | Chr4 | 13804748 | T-A | Homo | ||
| SBS | Chr4 | 554547 | T-C | HET | ||
| SBS | Chr5 | 13689512 | C-T | Homo | ||
| SBS | Chr5 | 26904105 | C-T | Homo | ||
| SBS | Chr5 | 27149320 | A-G | HET | ||
| SBS | Chr6 | 3017242 | G-A | Homo | ||
| SBS | Chr8 | 2191755 | A-G | HET | ||
| SBS | Chr8 | 2372186 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g04760 |
| SBS | Chr8 | 5982331 | A-T | Homo | ||
| SBS | Chr8 | 9638228 | C-T | Homo | ||
| SBS | Chr9 | 13656987 | T-A | HET | ||
| SBS | Chr9 | 5599307 | C-T | Homo | ||
| SBS | Chr9 | 6937312 | G-A | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 2274830 | 2274831 | 1 | |
| Deletion | Chr8 | 4252392 | 4252457 | 65 | |
| Deletion | Chr10 | 6817709 | 6817721 | 12 | |
| Deletion | Chr12 | 8717630 | 8717631 | 1 | |
| Deletion | Chr12 | 9225001 | 9255000 | 29999 | 5 |
| Deletion | Chr11 | 9624001 | 9697000 | 72999 | 12 |
| Deletion | Chr11 | 9702001 | 9715000 | 12999 | 4 |
| Deletion | Chr1 | 15306803 | 15306804 | 1 | |
| Deletion | Chr1 | 16907493 | 16907495 | 2 | LOC_Os01g30956 |
| Deletion | Chr2 | 21680001 | 21698000 | 17999 | 2 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 13719982 | 13719982 | 1 | |
| Insertion | Chr2 | 9396604 | 9396604 | 1 | |
| Insertion | Chr5 | 3028245 | 3028245 | 1 | |
| Insertion | Chr7 | 16419493 | 16419498 | 6 | |
| Insertion | Chr9 | 214333 | 214333 | 1 | LOC_Os09g01250 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 22763555 | 23144512 | LOC_Os12g37140 |
| Inversion | Chr12 | 22763573 | 23144512 | LOC_Os12g37140 |
| Inversion | Chr3 | 24736094 | 24753946 | |
| Inversion | Chr3 | 24745137 | 24753949 | LOC_Os03g44020 |
Translocations: 13
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 1502941 | Chr4 | 3250575 | |
| Translocation | Chr11 | 3679772 | Chr8 | 1216167 | |
| Translocation | Chr4 | 5215507 | Chr1 | 1044499 | LOC_Os04g09720 |
| Translocation | Chr10 | 6543810 | Chr3 | 24745132 | 2 |
| Translocation | Chr10 | 6543835 | Chr3 | 24740790 | LOC_Os10g11810 |
| Translocation | Chr7 | 8446301 | Chr2 | 25035121 | |
| Translocation | Chr9 | 9371386 | Chr7 | 4204682 | |
| Translocation | Chr12 | 10156933 | Chr1 | 3091756 | LOC_Os01g06560 |
| Translocation | Chr11 | 10561571 | Chr10 | 1626223 | LOC_Os10g03660 |
| Translocation | Chr5 | 14097374 | Chr3 | 23173845 | 2 |
| Translocation | Chr11 | 22094146 | Chr8 | 7405061 | |
| Translocation | Chr3 | 22994966 | Chr2 | 13225690 | 2 |
| Translocation | Chr8 | 23098575 | Chr4 | 22740558 |