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Mutant Information

Mutant Name	FN3974-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3974-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13935348	T-C	Homo
SBS	Chr1	33456900	C-T	HET
SBS	Chr1	9522352	T-G	HET
SBS	Chr10	22842409	T-C	HET
SBS	Chr11	14800675	G-A	Homo
SBS	Chr2	30804653	A-T	HET
SBS	Chr3	21476618	G-A	Homo
SBS	Chr4	18865416	G-A	Homo
SBS	Chr4	31897561	G-C	HET
SBS	Chr5	11376525	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19550
SBS	Chr5	20006305	C-T	HET
SBS	Chr6	15825434	G-A	Homo
SBS	Chr7	16975541	A-T	HET
SBS	Chr8	12743179	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g21360
SBS	Chr8	1591198	A-C	HET
SBS	Chr8	22527259	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35700
SBS	Chr8	28180251	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g44860
SBS	Chr9	21975764	G-T	HET
SBS	Chr9	6819892	T-G	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	5411233	5411238	5
Deletion	Chr11	9218758	9218770	12
Deletion	Chr6	9566003	9566009	6	LOC_Os06g16640
Deletion	Chr8	11099869	11099870	1
Deletion	Chr4	11560165	11560168	3
Deletion	Chr6	15598727	15598758	31
Deletion	Chr10	21352199	21352204	5
Deletion	Chr8	21844838	21844847	9	LOC_Os08g34750
Deletion	Chr7	23884239	23884563	324
Deletion	Chr8	25274049	25274051	2
Deletion	Chr8	25907963	25907973	10
Deletion	Chr12	26886516	26886530	14
Deletion	Chr4	27415506	27415510	4
Deletion	Chr2	35225090	35225091	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19823630	19823767	138
Insertion	Chr12	24798469	24798470	2
Insertion	Chr4	3853765	3853767	3	LOC_Os04g07260

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19772505	19794760	LOC_Os06g33950

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8398315	Chr7	8446303
Translocation	Chr11	9097324	Chr6	19772261	LOC_Os06g33950
Translocation	Chr11	9099450	Chr6	19794750	LOC_Os11g16450
Translocation	Chr8	10904277	Chr6	31115349	LOC_Os08g17784
Translocation	Chr8	10904366	Chr1	6146031	LOC_Os08g17784