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| Mutant Information |
|---|
| Mutant Name | FN3978-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3978-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26418162 | G-T | HET | ||
| SBS | Chr1 | 30377150 | C-A | HET | ||
| SBS | Chr1 | 31935092 | T-C | HET | ||
| SBS | Chr1 | 32365642 | G-A | HET | ||
| SBS | Chr1 | 33376601 | A-G | HET | ||
| SBS | Chr1 | 33409376 | T-C | HET | ||
| SBS | Chr1 | 39389886 | G-A | HET | ||
| SBS | Chr11 | 9070568 | C-T | HET | ||
| SBS | Chr12 | 19693346 | A-T | HET | ||
| SBS | Chr2 | 27932549 | T-C | Homo | ||
| SBS | Chr3 | 17954274 | G-T | HET | ||
| SBS | Chr3 | 30201594 | C-A | HET | ||
| SBS | Chr3 | 33382937 | C-T | HET | ||
| SBS | Chr3 | 33686502 | G-A | HET | ||
| SBS | Chr3 | 5148481 | T-A | HET | ||
| SBS | Chr4 | 11156076 | C-T | HET | ||
| SBS | Chr4 | 16832190 | A-G | HET | ||
| SBS | Chr4 | 3137515 | A-T | HET | ||
| SBS | Chr4 | 7874862 | T-A | Homo | ||
| SBS | Chr6 | 5955873 | C-T | HET | ||
| SBS | Chr7 | 17716577 | A-T | Homo | ||
| SBS | Chr7 | 17716578 | A-T | Homo | ||
| SBS | Chr8 | 20190514 | A-G | HET | ||
| SBS | Chr8 | 24640431 | C-T | HET | ||
| SBS | Chr8 | 9172337 | G-A | HET | ||
| SBS | Chr9 | 2323845 | C-T | HET | ||
| SBS | Chr9 | 2342755 | C-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 661806 | 661815 | 9 | |
| Deletion | Chr6 | 6074566 | 6074567 | 1 | |
| Deletion | Chr7 | 6941799 | 6941816 | 17 | |
| Deletion | Chr1 | 7835878 | 7835906 | 28 | |
| Deletion | Chr3 | 9425249 | 9425251 | 2 | |
| Deletion | Chr9 | 9638270 | 9638281 | 11 | |
| Deletion | Chr4 | 14442301 | 14442311 | 10 | LOC_Os04g25040 |
| Deletion | Chr9 | 21753495 | 21753500 | 5 | LOC_Os09g37760 |
| Deletion | Chr5 | 26869689 | 26869694 | 5 | |
| Deletion | Chr2 | 28792868 | 28792869 | 1 |
Insertions: 5
No Inversion
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 986546 | Chr4 | 20112251 | |
| Translocation | Chr8 | 3625895 | Chr1 | 38446831 | |
| Translocation | Chr8 | 3625948 | Chr1 | 38462038 | |
| Translocation | Chr6 | 5158122 | Chr4 | 19385982 | LOC_Os04g32340 |
| Translocation | Chr6 | 16552093 | Chr4 | 2748318 | 2 |
| Translocation | Chr7 | 20170939 | Chr6 | 5157867 | |
| Translocation | Chr12 | 24606942 | Chr5 | 2957569 | |
| Translocation | Chr12 | 27115079 | Chr3 | 17206796 |