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Mutant Information

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9713028	G-A	HET
SBS	Chr1	12033899	C-T	HET
SBS	Chr1	13444500	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g23890
SBS	Chr1	38469201	A-C	HET
SBS	Chr2	1249881	C-A	HET
SBS	Chr3	29013235	A-G	Homo
SBS	Chr4	25748965	G-T	HET
SBS	Chr5	1021248	T-G	HET
SBS	Chr5	24976134	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g43000
SBS	Chr6	464581	A-T	Homo
SBS	Chr6	26716125	G-A	HET
SBS	Chr9	4522599	G-A	HET
SBS	Chr10	6320427	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g11400
SBS	Chr10	11974636	A-C	HET
SBS	Chr10	12788823	C-T	HET
SBS	Chr11	2446118	T-A	Homo
SBS	Chr11	8813776	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g15560
SBS	Chr11	14146538	T-A	HET
SBS	Chr11	16128172	C-A	HET
SBS	Chr11	17163887	G-T	Homo

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	964001	1021000	56999	11
Deletion	Chr4	1253001	1291000	37999	4
Deletion	Chr4	2876001	2912000	35999	5
Deletion	Chr3	12759629	12759656	27
Deletion	Chr1	13384185	13384201	16
Deletion	Chr6	15138344	15138345	1	LOC_Os06g25890
Deletion	Chr1	16604566	16604568	2
Deletion	Chr4	16673628	16673630	2
Deletion	Chr10	17027092	17027093	1
Deletion	Chr10	17278691	17278692	1
Deletion	Chr10	21782853	21782854	1
Deletion	Chr11	26456001	26499000	42999	8
Deletion	Chr3	31627690	31627697	7
Deletion	Chr1	33023649	33023652	3	LOC_Os01g57130

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	2673087	2673088	2
Insertion	Chr2	1506963	1506963	1
Insertion	Chr4	35486289	35486289	1
Insertion	Chr5	1631783	1631783	1
Insertion	Chr5	11605772	11605772	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	13972433	13990394
Inversion	Chr1	16851379	16923806

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	2777013	Chr4	3631573
Translocation	Chr6	7292234	Chr2	18076972	LOC_Os02g30350
Translocation	Chr7	8762386	Chr2	13990388
Translocation	Chr7	8792552	Chr2	13972417	LOC_Os07g15250
Translocation	Chr3	15775770	Chr1	10262941	LOC_Os03g27490
Translocation	Chr8	16921182	Chr4	12564767
Translocation	Chr8	18628531	Chr4	2531485	2
Translocation	Chr6	21366154	Chr4	150582
Translocation	Chr4	27746172	Chr3	16831601

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