Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10497835	C-G	HET
SBS	Chr1	5479396	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g10400
SBS	Chr10	15350508	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g29540
SBS	Chr11	15080814	G-C	Homo
SBS	Chr11	2368064	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g05340
SBS	Chr11	9155356	A-T	Homo
SBS	Chr11	9155357	A-T	Homo
SBS	Chr12	11468824	T-G	Homo
SBS	Chr12	2477764	A-T	HET
SBS	Chr12	25107863	A-C	Homo
SBS	Chr12	4501090	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g08760
SBS	Chr12	5647395	C-T	HET
SBS	Chr2	18005318	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g30280
SBS	Chr2	19591192	T-A	HET
SBS	Chr2	20672118	G-A	HET
SBS	Chr3	32283361	T-G	HET
SBS	Chr4	12988913	A-G	HET
SBS	Chr4	16524967	C-A	HET
SBS	Chr4	23420760	C-T	HET
SBS	Chr4	26353955	T-C	Homo
SBS	Chr4	3116779	C-T	Homo	STOP_GAINED	LOC_Os04g06010
SBS	Chr4	5134425	T-C	HET
SBS	Chr4	8672847	C-T	HET
SBS	Chr5	27701773	C-T	HET
SBS	Chr5	3894289	T-C	HET
SBS	Chr6	6968587	G-A	Homo
SBS	Chr7	15202789	C-A	Homo
SBS	Chr7	15202790	T-A	Homo
SBS	Chr8	16873534	T-G	HET
SBS	Chr8	19157451	A-G	HET
SBS	Chr8	19892632	T-C	Homo
SBS	Chr8	23667308	A-T	Homo
SBS	Chr9	5814560	C-T	Homo
SBS	Chr9	6711410	C-A	HET
SBS	Chr9	8139946	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g13860

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2022001	2038000	15999	3
Deletion	Chr12	6920668	6920676	8
Deletion	Chr12	10239205	10239217	12
Deletion	Chr12	13170879	13170882	3
Deletion	Chr3	13453441	13453449	8
Deletion	Chr8	13578759	13578760	1
Deletion	Chr1	13831646	13831650	4
Deletion	Chr3	18737759	18737765	6
Deletion	Chr11	18960374	18960380	6
Deletion	Chr6	20260336	20260342	6
Deletion	Chr9	20926377	20926378	1
Deletion	Chr5	22064765	22064766	1
Deletion	Chr6	23562507	23562508	1
Deletion	Chr2	27293001	27332000	38999	3

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	10267294	10267465	172
Insertion	Chr3	19519041	19519042	2
Insertion	Chr3	34863825	34863853	29
Insertion	Chr4	1930310	1930310	1	LOC_Os04g04160
Insertion	Chr4	481220	481222	3

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3482235	3541194	LOC_Os12g07100
Inversion	Chr8	26908766	27201682

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3482246	Chr2	2016626	2
Translocation	Chr11	6190465	Chr9	1170742	LOC_Os11g11180
Translocation	Chr10	11709917	Chr2	18066714	LOC_Os10g22570
Translocation	Chr8	14544635	Chr1	37438095
Translocation	Chr8	15873357	Chr3	15487038	LOC_Os08g26100
Translocation	Chr12	22349211	Chr8	248911
Translocation	Chr11	26283613	Chr2	10494652	LOC_Os02g18070
Translocation	Chr8	26908761	Chr3	27761747
Translocation	Chr8	27201678	Chr3	27731809	LOC_Os03g48642

Main menu