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| Mutant Information |
|---|
| Mutant Name | FN3982-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3982-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 34161355 | A-G | HET | ||
| SBS | Chr1 | 7617124 | A-T | HET | ||
| SBS | Chr10 | 12721022 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24730 |
| SBS | Chr10 | 6982140 | T-A | HET | ||
| SBS | Chr11 | 5385355 | T-C | HET | ||
| SBS | Chr12 | 14986480 | A-G | HET | ||
| SBS | Chr2 | 18756145 | T-C | HET | ||
| SBS | Chr3 | 13710362 | T-C | Homo | ||
| SBS | Chr3 | 3308960 | C-G | HET | ||
| SBS | Chr3 | 35845711 | G-C | HET | ||
| SBS | Chr4 | 1499854 | C-G | HET | ||
| SBS | Chr4 | 16276835 | G-A | HET | ||
| SBS | Chr4 | 25425631 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g42980 |
| SBS | Chr5 | 578376 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g02020 |
| SBS | Chr6 | 23437248 | G-C | HET | ||
| SBS | Chr6 | 26947802 | C-T | HET | ||
| SBS | Chr8 | 16923516 | A-G | HET | ||
| SBS | Chr8 | 19204800 | G-A | Homo | ||
| SBS | Chr8 | 22790622 | C-T | HET | ||
| SBS | Chr8 | 26257550 | C-A | HET | ||
| SBS | Chr8 | 28414521 | C-T | HET | ||
| SBS | Chr8 | 9319445 | G-T | Homo | ||
| SBS | Chr9 | 12055327 | A-C | HET | ||
| SBS | Chr9 | 14910991 | A-C | HET | ||
| SBS | Chr9 | 4953017 | C-T | Homo |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 839862 | 839863 | 1 | |
| Deletion | Chr2 | 1636858 | 1636862 | 4 | |
| Deletion | Chr3 | 2452293 | 2452301 | 8 | LOC_Os03g05040 |
| Deletion | Chr8 | 2797662 | 2797675 | 13 | |
| Deletion | Chr8 | 3296681 | 3296699 | 18 | |
| Deletion | Chr1 | 4301239 | 4301247 | 8 | |
| Deletion | Chr2 | 6288124 | 6288125 | 1 | |
| Deletion | Chr1 | 10668816 | 10668817 | 1 | |
| Deletion | Chr5 | 11061292 | 11061293 | 1 | LOC_Os05g19050 |
| Deletion | Chr1 | 13973442 | 13973443 | 1 | |
| Deletion | Chr2 | 14169842 | 14169845 | 3 | |
| Deletion | Chr6 | 14294041 | 14294042 | 1 | |
| Deletion | Chr8 | 16206805 | 16206814 | 9 | |
| Deletion | Chr1 | 18537087 | 18537091 | 4 | |
| Deletion | Chr2 | 19913533 | 19913534 | 1 | LOC_Os02g33490 |
| Deletion | Chr5 | 20031276 | 20031279 | 3 | |
| Deletion | Chr1 | 20341928 | 20341932 | 4 | |
| Deletion | Chr12 | 20593712 | 20593721 | 9 | |
| Deletion | Chr1 | 21410632 | 21410635 | 3 | |
| Deletion | Chr6 | 24066679 | 24066680 | 1 | |
| Deletion | Chr3 | 34059244 | 34059245 | 1 | LOC_Os03g59810 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 28389567 | 28389602 | 36 | |
| Insertion | Chr4 | 18739189 | 18739190 | 2 | |
| Insertion | Chr8 | 1021228 | 1021231 | 4 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 6018842 | 6277446 | LOC_Os07g10970 |
| Inversion | Chr7 | 6018843 | 6277446 | LOC_Os07g10970 |
| Inversion | Chr8 | 15439232 | 15681370 | 2 |
| Inversion | Chr8 | 15439240 | 15681376 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 1487599 | Chr1 | 16146064 | 2 |
| Translocation | Chr12 | 5064854 | Chr4 | 24861834 | LOC_Os12g09610 |
| Translocation | Chr12 | 8376265 | Chr3 | 25764651 | LOC_Os12g14650 |
| Translocation | Chr10 | 12902910 | Chr1 | 24982829 | |
| Translocation | Chr10 | 12903649 | Chr1 | 24982828 | LOC_Os10g25070 |