Search Results
| Mutant Information |
|---|
| Mutant Name | FN3983-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3983-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14450401 | T-A | Homo | ||
| SBS | Chr1 | 33443657 | T-A | Homo | ||
| SBS | Chr2 | 5481847 | A-T | Homo | ||
| SBS | Chr2 | 33971205 | G-A | Homo | ||
| SBS | Chr3 | 20947047 | C-A | HET | ||
| SBS | Chr4 | 22927526 | C-T | HET | ||
| SBS | Chr4 | 23211286 | C-T | Homo | ||
| SBS | Chr4 | 23854773 | G-A | Homo | ||
| SBS | Chr4 | 32821985 | C-A | HET | ||
| SBS | Chr5 | 8542120 | A-G | HET | ||
| SBS | Chr5 | 13368723 | C-G | HET | ||
| SBS | Chr5 | 23735506 | A-G | HET | ||
| SBS | Chr5 | 27445813 | G-C | HET | ||
| SBS | Chr6 | 9656552 | T-C | HET | ||
| SBS | Chr6 | 16159375 | G-A | HET | ||
| SBS | Chr6 | 23784885 | T-A | Homo | ||
| SBS | Chr7 | 11775753 | G-A | Homo | ||
| SBS | Chr7 | 11775755 | T-A | Homo | ||
| SBS | Chr9 | 18446327 | A-T | HET | ||
| SBS | Chr10 | 21816941 | G-A | Homo | ||
| SBS | Chr11 | 496347 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g01920 |
| SBS | Chr11 | 14625178 | G-A | HET | ||
| SBS | Chr11 | 24648299 | C-T | Homo | ||
| SBS | Chr12 | 5289618 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g09990 |
| SBS | Chr12 | 7297485 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g13120 |
| SBS | Chr12 | 17934230 | C-A | Homo | ||
| SBS | Chr12 | 20829209 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g34360 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1919820 | 1919835 | 15 | |
| Deletion | Chr5 | 10776599 | 10776601 | 2 | |
| Deletion | Chr4 | 11963550 | 11963555 | 5 | LOC_Os04g21220 |
| Deletion | Chr1 | 14348689 | 14348720 | 31 | |
| Deletion | Chr2 | 15334931 | 15334932 | 1 | |
| Deletion | Chr12 | 20439623 | 20439624 | 1 | |
| Deletion | Chr9 | 21181603 | 21181605 | 2 | |
| Deletion | Chr7 | 22032163 | 22032165 | 2 | |
| Deletion | Chr4 | 22560801 | 22560812 | 11 | |
| Deletion | Chr12 | 27414990 | 27415311 | 321 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 169904 | 169909 | 6 | |
| Insertion | Chr11 | 18082291 | 18082294 | 4 | |
| Insertion | Chr7 | 6425782 | 6425782 | 1 | |
| Insertion | Chr8 | 12238217 | 12238217 | 1 | LOC_Os08g20370 |
| Insertion | Chr9 | 2935867 | 2935867 | 1 | |
| Insertion | Chr10 | 6049225 | 6049226 | 2 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 21564275 | 21846914 | LOC_Os09g37890 |
| Inversion | Chr9 | 21564302 | 21846922 | LOC_Os09g37890 |
| Inversion | Chr3 | 25730931 | 25826688 | LOC_Os03g45590 |
| Inversion | Chr3 | 25730932 | 25826671 | LOC_Os03g45590 |
| Inversion | Chr4 | 27263540 | 27263827 | LOC_Os04g46020 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 9498609 | Chr3 | 10131082 | |
| Translocation | Chr6 | 9669460 | Chr4 | 24861734 | |
| Translocation | Chr6 | 9669465 | Chr4 | 24860270 | |
| Translocation | Chr12 | 13348683 | Chr6 | 22360281 | LOC_Os06g37760 |
| Translocation | Chr9 | 20287880 | Chr6 | 13312736 | |
| Translocation | Chr10 | 21733997 | Chr2 | 18287278 | LOC_Os10g40580 |
| Translocation | Chr12 | 22307755 | Chr3 | 25887881 | |
| Translocation | Chr11 | 23445933 | Chr3 | 14592962 |