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| Mutant Information |
|---|
| Mutant Name | FN3985-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3985-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25501162 | C-A | Homo | ||
| SBS | Chr11 | 14350057 | G-T | HET | ||
| SBS | Chr11 | 14350058 | A-G | HET | ||
| SBS | Chr11 | 17636119 | A-G | HET | ||
| SBS | Chr12 | 26296076 | G-T | Homo | ||
| SBS | Chr12 | 2764550 | C-A | HET | ||
| SBS | Chr2 | 22740559 | G-T | HET | ||
| SBS | Chr3 | 14955497 | C-T | HET | ||
| SBS | Chr3 | 23429493 | G-A | HET | ||
| SBS | Chr3 | 33074723 | A-T | Homo | ||
| SBS | Chr4 | 16799117 | A-T | HET | ||
| SBS | Chr4 | 22642831 | C-T | Homo | ||
| SBS | Chr4 | 33511067 | G-A | Homo | ||
| SBS | Chr4 | 7420905 | C-T | Homo | ||
| SBS | Chr5 | 7219125 | A-G | Homo | ||
| SBS | Chr6 | 17554414 | C-T | HET | ||
| SBS | Chr6 | 7602698 | C-T | HET | ||
| SBS | Chr7 | 10053905 | G-A | HET | ||
| SBS | Chr7 | 17994260 | G-C | HET | ||
| SBS | Chr7 | 29603547 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g49430 |
| SBS | Chr8 | 14743238 | G-A | HET | ||
| SBS | Chr8 | 20933856 | G-T | HET | ||
| SBS | Chr9 | 15894407 | G-T | HET |
Deletions: 28
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1891016 | 1891027 | 11 | |
| Deletion | Chr1 | 4123369 | 4123371 | 2 | |
| Deletion | Chr2 | 5633530 | 5633544 | 14 | |
| Deletion | Chr3 | 6024347 | 6024349 | 2 | |
| Deletion | Chr3 | 6722001 | 6746000 | 23999 | 2 |
| Deletion | Chr9 | 6788816 | 6788818 | 2 | |
| Deletion | Chr12 | 8692269 | 8692274 | 5 | |
| Deletion | Chr10 | 10660987 | 10661007 | 20 | |
| Deletion | Chr1 | 10836021 | 10836022 | 1 | |
| Deletion | Chr10 | 12158976 | 12158978 | 2 | |
| Deletion | Chr10 | 14836966 | 14836976 | 10 | |
| Deletion | Chr6 | 17708332 | 17708345 | 13 | |
| Deletion | Chr4 | 18211911 | 18211913 | 2 | |
| Deletion | Chr3 | 18266090 | 18266091 | 1 | |
| Deletion | Chr4 | 19578059 | 19578060 | 1 | |
| Deletion | Chr6 | 19767990 | 19767991 | 1 | |
| Deletion | Chr5 | 21315906 | 21315923 | 17 | |
| Deletion | Chr12 | 22443052 | 22443063 | 11 | |
| Deletion | Chr2 | 23045805 | 23045820 | 15 | LOC_Os02g38120 |
| Deletion | Chr3 | 23777533 | 23777541 | 8 | |
| Deletion | Chr11 | 24435849 | 24435851 | 2 | |
| Deletion | Chr11 | 25293890 | 25293891 | 1 | |
| Deletion | Chr1 | 26001261 | 26001262 | 1 | |
| Deletion | Chr1 | 26528082 | 26528101 | 19 | |
| Deletion | Chr8 | 26579211 | 26579217 | 6 | |
| Deletion | Chr7 | 26685059 | 26685060 | 1 | LOC_Os07g44710 |
| Deletion | Chr11 | 27234356 | 27234357 | 1 | LOC_Os11g44970 |
| Deletion | Chr4 | 35241495 | 35241498 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 3362055 | 3362056 | 2 | |
| Insertion | Chr4 | 480831 | 480834 | 4 | |
| Insertion | Chr6 | 3255931 | 3255932 | 2 | |
| Insertion | Chr8 | 6938292 | 6938292 | 1 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 2731001 | Chr2 | 6409686 | 2 |