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| Mutant Information |
|---|
| Mutant Name | FN3987-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3987-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16832183 | G-T | Homo | ||
| SBS | Chr1 | 1973383 | G-A | HET | ||
| SBS | Chr1 | 27542905 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g48110 |
| SBS | Chr1 | 29186150 | A-T | HET | ||
| SBS | Chr1 | 8533560 | G-A | HET | ||
| SBS | Chr10 | 13733720 | T-C | HET | ||
| SBS | Chr10 | 5340287 | C-A | HET | ||
| SBS | Chr11 | 10865581 | C-T | HET | ||
| SBS | Chr12 | 21640789 | C-A | Homo | ||
| SBS | Chr12 | 27140619 | G-A | HET | ||
| SBS | Chr2 | 17041450 | G-A | Homo | ||
| SBS | Chr3 | 10308797 | T-A | Homo | ||
| SBS | Chr3 | 22578774 | G-T | HET | ||
| SBS | Chr3 | 33828585 | A-G | Homo | ||
| SBS | Chr4 | 9364798 | A-G | Homo | ||
| SBS | Chr4 | 9652348 | C-T | Homo | ||
| SBS | Chr5 | 13286705 | T-A | HET | ||
| SBS | Chr5 | 25925887 | G-A | Homo | ||
| SBS | Chr6 | 11385674 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g19900 |
| SBS | Chr6 | 12970890 | T-C | Homo | ||
| SBS | Chr6 | 16723225 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g29300 |
| SBS | Chr7 | 26168874 | A-G | HET | ||
| SBS | Chr7 | 6766159 | A-T | HET | SPLICE_SITE_DONOR | LOC_Os07g12110 |
| SBS | Chr8 | 18391490 | G-C | Homo | ||
| SBS | Chr8 | 22097754 | A-G | HET | ||
| SBS | Chr8 | 23814943 | G-A | HET | ||
| SBS | Chr8 | 3386914 | G-A | HET | ||
| SBS | Chr9 | 7757448 | A-G | HET |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2497663 | 2497666 | 3 | |
| Deletion | Chr6 | 4543999 | 4544002 | 3 | |
| Deletion | Chr8 | 5006975 | 5006977 | 2 | |
| Deletion | Chr12 | 5161514 | 5161518 | 4 | |
| Deletion | Chr1 | 10679405 | 10679412 | 7 | |
| Deletion | Chr12 | 11073591 | 11073593 | 2 | |
| Deletion | Chr3 | 18698523 | 18698527 | 4 | |
| Deletion | Chr3 | 19369607 | 19369622 | 15 | LOC_Os03g33940 |
| Deletion | Chr5 | 20011474 | 20011478 | 4 | |
| Deletion | Chr8 | 22965232 | 22965245 | 13 | |
| Deletion | Chr3 | 23551527 | 23551530 | 3 | |
| Deletion | Chr3 | 27660001 | 27682000 | 21999 | 4 |
| Deletion | Chr5 | 28444804 | 28444820 | 16 | |
| Deletion | Chr6 | 29820440 | 29820449 | 9 | |
| Deletion | Chr2 | 32514887 | 32514888 | 1 | LOC_Os02g53130 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 28691225 | 28691226 | 2 | |
| Insertion | Chr5 | 7891748 | 7891748 | 1 | |
| Insertion | Chr8 | 12235559 | 12235559 | 1 |
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 7408646 | Chr5 | 3127080 | LOC_Os07g12900 |
| Translocation | Chr10 | 14701950 | Chr7 | 7408646 | LOC_Os07g12900 |