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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17090138	C-T	HOMO	INTERGENIC
SBS	Chr1	30573794	C-T	HOMO	INTERGENIC
SBS	Chr1	5814002	T-A	HET	INTERGENIC
SBS	Chr1	7856971	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g14030
SBS	Chr10	14267564	C-A	HET	INTERGENIC
SBS	Chr10	4913448	T-C	HET	INTERGENIC
SBS	Chr11	11974037	C-T	HOMO	INTRON
SBS	Chr11	19053843	C-T	HET	INTERGENIC
SBS	Chr11	4556000	G-A	HET	INTRON
SBS	Chr2	24221230	T-G	HET	INTERGENIC
SBS	Chr2	25966551	C-T	HET	INTERGENIC
SBS	Chr2	29506786	G-A	HET	INTERGENIC
SBS	Chr2	4801633	A-G	HOMO	INTRON
SBS	Chr2	986313	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g02660
SBS	Chr3	15641115	C-G	HET	INTRON
SBS	Chr4	11068688	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g19820
SBS	Chr4	26384100	G-A	HET	INTRON
SBS	Chr4	6557547	G-A	HOMO	INTERGENIC
SBS	Chr5	14367557	C-G	HET	INTERGENIC
SBS	Chr5	3122892	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	4470689	T-C	HOMO	INTERGENIC
SBS	Chr5	5021075	G-A	HOMO	INTERGENIC
SBS	Chr6	15352989	G-A	HET	INTRON
SBS	Chr6	16745719	C-A	HET	INTERGENIC
SBS	Chr6	28063149	G-A	HET	INTRON
SBS	Chr6	3032896	A-G	HET	INTERGENIC
SBS	Chr6	9171772	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g16100
SBS	Chr7	15235444	T-C	HET	INTERGENIC
SBS	Chr7	20622117	G-C	HET	INTERGENIC
SBS	Chr8	14243251	G-T	HET	INTERGENIC
SBS	Chr8	23033388	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g36480
SBS	Chr9	5451167	G-T	HET	INTERGENIC
SBS	Chr9	9572760	C-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1609252	1609253	1
Deletion	Chr4	3275780	3275798	18
Deletion	Chr8	4868998	4868999	1	LOC_Os08g08450
Deletion	Chr6	6282757	6282761	4
Deletion	Chr9	8386281	8386295	14
Deletion	Chr10	8516321	8516323	2
Deletion	Chr3	11583848	11583868	20
Deletion	Chr11	12647995	12648004	9
Deletion	Chr2	12673113	12673134	21
Deletion	Chr3	14447985	14448011	26
Deletion	Chr12	15010734	15010740	6
Deletion	Chr8	19685486	19685489	3
Deletion	Chr4	20589482	20589489	7
Deletion	Chr7	20621551	20621568	17
Deletion	Chr11	20763236	20763251	15	LOC_Os11g35430
Deletion	Chr2	21321344	21321345	1
Deletion	Chr11	21797140	21797147	7
Deletion	Chr11	23422963	23422971	8	LOC_Os11g39350
Deletion	Chr11	23512960	23512975	15
Deletion	Chr6	24952832	24952858	26
Deletion	Chr5	28516220	28516221	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	30567687	30567688	2
Insertion	Chr4	20695131	20695131	1
Insertion	Chr7	1274621	1274644	24	LOC_Os07g03230
Insertion	Chr7	22993993	22993998	6

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	19498227	19774214	LOC_Os09g33520

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	6595762	Chr1	30430109	LOC_Os01g52920
Translocation	Chr7	6595840	Chr1	30430450	LOC_Os01g52920

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