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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23403974	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g41360
SBS	Chr1	30047808	G-A	HET
SBS	Chr1	31771745	G-T	HET
SBS	Chr1	39338374	A-G	Homo
SBS	Chr1	720115	G-A	HET
SBS	Chr10	19601892	C-A	Homo
SBS	Chr10	2502834	A-T	HET
SBS	Chr10	5586424	G-A	HET
SBS	Chr10	6058274	G-A	HET
SBS	Chr11	12666951	C-T	HET
SBS	Chr11	24036268	T-A	Homo
SBS	Chr11	3655287	C-G	HET
SBS	Chr12	27462709	G-T	Homo
SBS	Chr2	21926529	A-G	HET
SBS	Chr2	31525582	A-T	HET
SBS	Chr2	31525583	A-T	HET
SBS	Chr2	34009567	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g55540
SBS	Chr2	35734030	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g58430
SBS	Chr2	8758003	C-A	Homo
SBS	Chr3	11328407	T-C	HET
SBS	Chr3	22952441	T-A	HET
SBS	Chr3	33197573	T-C	Homo
SBS	Chr3	4642220	C-T	Homo
SBS	Chr4	4797637	T-A	HET
SBS	Chr4	793717	A-G	HET
SBS	Chr5	144531	T-C	HET
SBS	Chr6	12390434	G-A	HET
SBS	Chr6	17078245	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g29740
SBS	Chr7	17881750	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30250
SBS	Chr7	17881751	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30250
SBS	Chr8	4341186	G-A	Homo
SBS	Chr9	1153108	C-A	HET
SBS	Chr9	17064921	G-T	HET
SBS	Chr9	9737781	C-T	HET
SBS	Chr9	9737785	A-G	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2421557	2421559	2
Deletion	Chr7	2717254	2717258	4	LOC_Os07g05690
Deletion	Chr5	3466073	3466075	2
Deletion	Chr1	3758842	3758843	1
Deletion	Chr2	7832366	7832370	4
Deletion	Chr12	9106956	9106958	2
Deletion	Chr6	11220460	11220469	9	LOC_Os06g19660
Deletion	Chr3	14053001	14065000	11999	LOC_Os03g24680
Deletion	Chr8	14782464	14782474	10	LOC_Os08g24470
Deletion	Chr5	18475001	18617000	141999	22
Deletion	Chr9	19218959	19218964	5
Deletion	Chr2	20986153	20986156	3
Deletion	Chr2	21916649	21916655	6
Deletion	Chr2	22703382	22703418	36	LOC_Os02g37620
Deletion	Chr3	26927208	26927212	4
Deletion	Chr6	30712942	30712943	1
Deletion	Chr3	31697777	31697798	21	LOC_Os03g55680

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	36934651	36934652	2
Insertion	Chr10	15983382	15983539	158
Insertion	Chr3	18861924	18861924	1
Insertion	Chr3	7121433	7121434	2
Insertion	Chr4	10219462	10219462	1
Insertion	Chr6	17523889	17523892	4	LOC_Os06g30340
Insertion	Chr8	18431140	18431140	1
Insertion	Chr9	15529192	15529193	2
Insertion	Chr9	2067615	2067620	6

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9841538	9842995
Inversion	Chr7	17410748	17500637	2
Inversion	Chr7	17410750	17500638	2
Inversion	Chr1	17844293	17844841
Inversion	Chr2	22363667	22599215
Inversion	Chr2	22363670	22599217
Inversion	Chr2	24789168	25155744
Inversion	Chr2	24789182	25155746

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6769544	Chr5	8802760	LOC_Os05g15550
Translocation	Chr11	10924574	Chr9	7407204
Translocation	Chr9	13071052	Chr2	30406425	LOC_Os09g21590
Translocation	Chr8	19479946	Chr4	35499315

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