Search Results
| Mutant Information |
|---|
| Mutant Name | FN3993-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3993-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8144089 | C-A | HET | ||
| SBS | Chr1 | 11737863 | C-T | HET | ||
| SBS | Chr1 | 12882365 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g22910 |
| SBS | Chr1 | 14896827 | A-T | Homo | ||
| SBS | Chr1 | 27827584 | C-T | Homo | ||
| SBS | Chr1 | 34114647 | T-C | HET | ||
| SBS | Chr2 | 25849664 | C-T | Homo | ||
| SBS | Chr2 | 31564496 | A-T | HET | ||
| SBS | Chr4 | 7868417 | C-T | Homo | ||
| SBS | Chr4 | 20668031 | G-T | HET | ||
| SBS | Chr4 | 28006455 | A-T | HET | ||
| SBS | Chr5 | 4673689 | G-A | HET | ||
| SBS | Chr6 | 20769125 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g35590 |
| SBS | Chr6 | 25228940 | C-A | HET | ||
| SBS | Chr6 | 30421123 | A-T | HET | ||
| SBS | Chr7 | 12655227 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g22494 |
| SBS | Chr7 | 16536956 | A-T | Homo | ||
| SBS | Chr8 | 6858930 | A-G | HET | ||
| SBS | Chr8 | 10553957 | C-G | HET | ||
| SBS | Chr8 | 17407356 | G-A | HET | ||
| SBS | Chr8 | 18267873 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g29730 |
| SBS | Chr8 | 19539649 | T-A | HET | ||
| SBS | Chr11 | 11214711 | A-T | Homo | ||
| SBS | Chr11 | 14522208 | G-T | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 2215589 | 2215592 | 3 | |
| Deletion | Chr10 | 4044847 | 4044849 | 2 | |
| Deletion | Chr9 | 6661001 | 6775000 | 113999 | 15 |
| Deletion | Chr12 | 8672311 | 8672322 | 11 | LOC_Os12g15222 |
| Deletion | Chr7 | 9799304 | 9799309 | 5 | |
| Deletion | Chr6 | 10439069 | 10439074 | 5 | LOC_Os06g17950 |
| Deletion | Chr12 | 11779405 | 11779415 | 10 | |
| Deletion | Chr12 | 11815113 | 11815116 | 3 | |
| Deletion | Chr4 | 12120850 | 12120865 | 15 | |
| Deletion | Chr3 | 15300188 | 15300198 | 10 | |
| Deletion | Chr10 | 18973225 | 18973235 | 10 | |
| Deletion | Chr9 | 19824001 | 19832000 | 7999 | LOC_Os09g33600 |
| Deletion | Chr4 | 22319899 | 22319901 | 2 | |
| Deletion | Chr1 | 27023480 | 27023486 | 6 | |
| Deletion | Chr1 | 39548175 | 39548178 | 3 | LOC_Os01g68020 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 17658005 | 17658005 | 1 | |
| Insertion | Chr5 | 8801263 | 8801266 | 4 | |
| Insertion | Chr6 | 22465517 | 22465517 | 1 | |
| Insertion | Chr12 | 15228442 | 15228455 | 14 | LOC_Os12g26140 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 19832251 | 20057244 | LOC_Os09g33970 |
| Inversion | Chr9 | 20190959 | 20516316 | LOC_Os09g34200 |
| Inversion | Chr9 | 20191059 | 20516370 | LOC_Os09g34200 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 4368620 | Chr2 | 19585394 | |
| Translocation | Chr12 | 5600342 | Chr10 | 6728800 | |
| Translocation | Chr8 | 9703302 | Chr6 | 18191761 | |
| Translocation | Chr2 | 11547058 | Chr1 | 38746611 | LOC_Os02g19730 |
| Translocation | Chr2 | 16489475 | Chr1 | 26061591 | 2 |
| Translocation | Chr9 | 19823383 | Chr1 | 31814735 | |
| Translocation | Chr9 | 20057229 | Chr1 | 31815473 | LOC_Os09g33970 |
| Translocation | Chr9 | 20516370 | Chr1 | 1345151 | LOC_Os01g03330 |