Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16925205	C-T	HET
SBS	Chr1	20882447	C-T	HET
SBS	Chr1	4132297	A-G	HET
SBS	Chr10	15025539	C-G	HET
SBS	Chr12	24912505	C-T	HET
SBS	Chr12	24912506	G-T	HET
SBS	Chr2	156474	A-C	Homo
SBS	Chr2	19640875	C-T	Homo
SBS	Chr2	27886738	G-A	HET
SBS	Chr3	27380930	G-A	Homo	STOP_GAINED	LOC_Os03g48140
SBS	Chr3	27380931	C-A	Homo
SBS	Chr3	33649779	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g59110
SBS	Chr3	35031984	G-C	Homo
SBS	Chr4	11583808	T-A	HET
SBS	Chr4	4671784	G-A	HET
SBS	Chr6	26695888	C-T	HET
SBS	Chr6	7019727	A-G	HET
SBS	Chr8	27425643	A-G	HET
SBS	Chr9	22517727	A-G	HET
SBS	Chr9	8453833	C-T	HET
SBS	Chr9	9473120	C-T	Homo

Deletions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr2	2127187	2127189	2
Deletion	Chr10	12947900	12947901	1
Deletion	Chr4	21950784	21950785	1
Deletion	Chr6	25172628	25172632	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	24759160	24759160	1
Insertion	Chr3	24130566	24130581	16

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	28059711	28126181	LOC_Os06g46310
Inversion	Chr6	28059723	28126179	LOC_Os06g46310

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	7720116	Chr6	4358309
Translocation	Chr12	10365894	Chr4	32549768	LOC_Os04g54730
Translocation	Chr9	20546837	Chr6	23626170	LOC_Os09g35720
Translocation	Chr11	22848260	Chr4	22543780
Translocation	Chr11	22848271	Chr10	19167798	LOC_Os10g35850
Translocation	Chr11	22848400	Chr10	19167796	LOC_Os10g35850

Main menu