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Mutant Information

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18320343	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g33260
SBS	Chr10	5445086	T-A	HET	INTRON
SBS	Chr11	12896705	G-C	HET	INTERGENIC
SBS	Chr11	23748331	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g39830
SBS	Chr12	4236647	G-A	HET	INTERGENIC
SBS	Chr12	9577248	G-T	HET	INTRON
SBS	Chr2	33586304	A-T	HOMO	INTERGENIC
SBS	Chr2	3579220	G-A	HOMO	INTERGENIC
SBS	Chr3	31214314	A-T	HET	INTERGENIC
SBS	Chr4	17721704	A-G	HET	INTERGENIC
SBS	Chr4	22554804	G-T	HET	UTR_3_PRIME
SBS	Chr4	22554805	C-T	HET	UTR_3_PRIME
SBS	Chr4	22554806	A-T	HET	UTR_3_PRIME
SBS	Chr7	25553258	C-T	HET	INTERGENIC
SBS	Chr8	2545678	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g04970
SBS	Chr8	26323932	T-C	HOMO	INTERGENIC
SBS	Chr9	3528595	G-A	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	712658	721235	8577	2
Deletion	Chr11	3499001	3628000	129000	19
Deletion	Chr5	4386611	4386625	14
Deletion	Chr5	4672369	4672374	5	LOC_Os05g08560
Deletion	Chr7	5189719	5189730	11
Deletion	Chr2	7165931	7165936	5	LOC_Os02g13420
Deletion	Chr4	8250556	8250572	16
Deletion	Chr1	9631146	9631150	4
Deletion	Chr10	10162090	10162091	1
Deletion	Chr11	14283134	14283141	7
Deletion	Chr10	14625833	14625855	22
Deletion	Chr2	15387485	15403042	15557	3
Deletion	Chr11	17642869	17642874	5
Deletion	Chr9	19921483	19921492	9	LOC_Os09g33730
Deletion	Chr6	20597262	20597263	1
Deletion	Chr1	21170579	21170599	20	LOC_Os01g37832
Deletion	Chr1	21441526	21441530	4
Deletion	Chr11	23158285	23158289	4
Deletion	Chr6	23720353	23722842	2489	LOC_Os06g39900
Deletion	Chr7	26660229	26660231	2
Deletion	Chr4	27053538	27053548	10

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1048162	1048163	2
Insertion	Chr10	17865977	17865982	6
Insertion	Chr11	21715675	21715675	1
Insertion	Chr11	28676529	28676531	3
Insertion	Chr6	20027661	20027666	6
Insertion	Chr9	7196896	7196897	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr12	20323596	21903924
Inversion	Chr2	20779477	25156045
Inversion	Chr12	21820276	21830381

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	8673634	Chr3	1962741

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