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Mutant Information |
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Mutant Name | FN4010-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4010-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 21
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 1485474 | C-T | HET | ||
SBS | Chr1 | 3941441 | G-A | HET | ||
SBS | Chr1 | 30654149 | G-A | HET | ||
SBS | Chr1 | 31436429 | T-C | HET | ||
SBS | Chr1 | 31567978 | C-T | HET | ||
SBS | Chr2 | 20913122 | A-C | HET | ||
SBS | Chr2 | 25063206 | G-A | HET | ||
SBS | Chr2 | 32144692 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g52530 |
SBS | Chr3 | 18143834 | T-A | HET | ||
SBS | Chr4 | 546550 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g01874 |
SBS | Chr4 | 31373763 | G-T | HET | ||
SBS | Chr5 | 14114745 | G-A | Homo | ||
SBS | Chr5 | 17990868 | A-G | HET | ||
SBS | Chr7 | 3529313 | A-T | Homo | ||
SBS | Chr8 | 12114540 | T-A | HET | ||
SBS | Chr8 | 13595530 | G-T | HET | ||
SBS | Chr9 | 22816007 | C-T | HET | ||
SBS | Chr10 | 9339915 | C-T | Homo | ||
SBS | Chr11 | 3444785 | T-C | HET | ||
SBS | Chr11 | 13702830 | C-T | HET | ||
SBS | Chr11 | 26432756 | G-T | HET |
Deletions: 12
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr5 | 742224 | 742225 | 1 | |
Deletion | Chr11 | 4618807 | 4618809 | 2 | |
Deletion | Chr2 | 7552299 | 7552303 | 4 | |
Deletion | Chr10 | 7613340 | 7613341 | 1 | |
Deletion | Chr2 | 9704363 | 9704364 | 1 | |
Deletion | Chr1 | 9774001 | 10014000 | 239999 | 29 |
Deletion | Chr6 | 14736372 | 14736378 | 6 | LOC_Os06g25180 |
Deletion | Chr12 | 16997108 | 16997117 | 9 | |
Deletion | Chr2 | 18489539 | 18489546 | 7 | |
Deletion | Chr10 | 18738606 | 18738608 | 2 | |
Deletion | Chr3 | 22187029 | 22187044 | 15 | |
Deletion | Chr10 | 22700883 | 22700886 | 3 |
Insertions: 7
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr2 | 25904147 | 26291648 | |
Inversion | Chr2 | 25904154 | 26291661 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr6 | 1208015 | Chr5 | 12013251 | 2 |
Translocation | Chr11 | 13511438 | Chr3 | 10048447 |