Search Results
| Mutant Information |
|---|
| Mutant Name | FN4011-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4011-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3782112 | A-T | HET | ||
| SBS | Chr1 | 36035126 | T-C | HET | ||
| SBS | Chr1 | 37834264 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g65200 |
| SBS | Chr1 | 39302254 | C-T | HET | STOP_GAINED | LOC_Os01g67610 |
| SBS | Chr1 | 39767475 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g68430 |
| SBS | Chr2 | 9689665 | T-A | Homo | ||
| SBS | Chr2 | 23053713 | C-T | HET | ||
| SBS | Chr2 | 32883733 | T-C | HET | ||
| SBS | Chr3 | 3811868 | G-A | HET | ||
| SBS | Chr3 | 5024961 | G-A | Homo | ||
| SBS | Chr3 | 23394013 | G-A | Homo | ||
| SBS | Chr3 | 29098394 | G-A | Homo | ||
| SBS | Chr4 | 1252627 | T-C | HET | ||
| SBS | Chr4 | 2646472 | G-C | HET | ||
| SBS | Chr4 | 10501626 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g18884 |
| SBS | Chr4 | 19903709 | C-T | Homo | ||
| SBS | Chr4 | 21062961 | A-T | Homo | ||
| SBS | Chr5 | 2909871 | A-G | HET | ||
| SBS | Chr5 | 6505002 | C-T | Homo | ||
| SBS | Chr5 | 19278885 | G-A | HET | ||
| SBS | Chr6 | 23218765 | G-A | Homo | ||
| SBS | Chr6 | 24968562 | C-T | Homo | ||
| SBS | Chr6 | 28803322 | A-G | Homo | ||
| SBS | Chr7 | 870773 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g02490 |
| SBS | Chr7 | 870774 | C-A | HET | STOP_GAINED | LOC_Os07g02490 |
| SBS | Chr7 | 20235429 | C-T | HET | ||
| SBS | Chr8 | 6958791 | C-A | HET | ||
| SBS | Chr8 | 23806166 | G-T | HET | ||
| SBS | Chr8 | 24062886 | A-T | HET | ||
| SBS | Chr8 | 27391145 | G-A | HET | ||
| SBS | Chr9 | 12162665 | C-T | HET | ||
| SBS | Chr9 | 15572200 | G-A | HET | ||
| SBS | Chr9 | 19617225 | G-A | HET | ||
| SBS | Chr10 | 7704969 | G-C | HET | ||
| SBS | Chr10 | 11736968 | C-T | HET | ||
| SBS | Chr11 | 24328129 | T-C | HET | ||
| SBS | Chr12 | 5321946 | T-A | HET | ||
| SBS | Chr12 | 20306123 | G-C | HET | ||
| SBS | Chr12 | 27139308 | C-T | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 2355099 | 2355100 | 1 | |
| Deletion | Chr7 | 4672217 | 4672218 | 1 | |
| Deletion | Chr1 | 6057046 | 6057056 | 10 | |
| Deletion | Chr11 | 6124943 | 6124944 | 1 | |
| Deletion | Chr2 | 8147241 | 8147242 | 1 | |
| Deletion | Chr3 | 8560001 | 8560004 | 3 | LOC_Os03g15550 |
| Deletion | Chr11 | 9739365 | 9739368 | 3 | |
| Deletion | Chr9 | 14829726 | 14829728 | 2 | |
| Deletion | Chr8 | 18037829 | 18037832 | 3 | LOC_Os08g29420 |
| Deletion | Chr12 | 19894001 | 19894006 | 5 | |
| Deletion | Chr3 | 23394036 | 23394042 | 6 | |
| Deletion | Chr12 | 24501702 | 24501712 | 10 | |
| Deletion | Chr2 | 27345303 | 27345312 | 9 | |
| Deletion | Chr1 | 27542294 | 27542297 | 3 | |
| Deletion | Chr5 | 27859065 | 27859081 | 16 | |
| Deletion | Chr5 | 29885400 | 29885754 | 354 | |
| Deletion | Chr2 | 30944039 | 30944040 | 1 | LOC_Os02g50660 |
| Deletion | Chr2 | 31048001 | 31080000 | 31999 | 4 |
| Deletion | Chr3 | 31741360 | 31741377 | 17 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 9104580 | 9104580 | 1 | |
| Insertion | Chr8 | 95845 | 95880 | 36 |
Inversions: 12
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 4067333 | 4488043 | LOC_Os03g08700 |
| Inversion | Chr3 | 4067339 | 4488761 | LOC_Os03g08700 |
| Inversion | Chr12 | 5704506 | 5722800 | LOC_Os12g10670 |
| Inversion | Chr7 | 7304339 | 8017384 | LOC_Os07g14050 |
| Inversion | Chr7 | 7304341 | 8017391 | LOC_Os07g14050 |
| Inversion | Chr4 | 9923578 | 9928042 | LOC_Os04g18020 |
| Inversion | Chr4 | 9923598 | 9928044 | LOC_Os04g18020 |
| Inversion | Chr8 | 13369335 | 13388161 | |
| Inversion | Chr4 | 25618053 | 25948739 | |
| Inversion | Chr4 | 25618059 | 25948737 | |
| Inversion | Chr5 | 27591655 | 27844864 | |
| Inversion | Chr5 | 27844855 | 28039794 | LOC_Os05g48870 |
Translocations: 13
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 1493712 | Chr6 | 8905868 | |
| Translocation | Chr8 | 4528842 | Chr5 | 27591643 | LOC_Os08g08000 |
| Translocation | Chr8 | 4528848 | Chr5 | 27763453 | 2 |
| Translocation | Chr12 | 5722801 | Chr8 | 2040311 | |
| Translocation | Chr11 | 5815492 | Chr5 | 13278624 | LOC_Os11g10600 |
| Translocation | Chr10 | 6068678 | Chr8 | 17058289 | |
| Translocation | Chr6 | 9473710 | Chr3 | 16475641 | LOC_Os03g29020 |
| Translocation | Chr7 | 12534275 | Chr6 | 18214712 | |
| Translocation | Chr5 | 17627891 | Chr1 | 42980730 | |
| Translocation | Chr7 | 19570787 | Chr6 | 10581656 | LOC_Os07g32750 |
| Translocation | Chr12 | 19763492 | Chr5 | 28571090 | |
| Translocation | Chr12 | 22623003 | Chr11 | 22169200 | LOC_Os11g37540 |
| Translocation | Chr3 | 25863207 | Chr2 | 16083922 |