Search Results
| Mutant Information |
|---|
| Mutant Name | FN4016-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4016-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23424981 | T-G | Homo | ||
| SBS | Chr1 | 23424982 | G-T | Homo | ||
| SBS | Chr1 | 35829762 | A-T | Homo | ||
| SBS | Chr1 | 36591053 | A-G | Homo | ||
| SBS | Chr2 | 944711 | A-T | HET | ||
| SBS | Chr2 | 1093880 | T-G | HET | ||
| SBS | Chr2 | 35575545 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g58139 |
| SBS | Chr3 | 15952670 | C-T | Homo | ||
| SBS | Chr4 | 13203317 | T-C | Homo | ||
| SBS | Chr4 | 23131552 | T-C | HET | ||
| SBS | Chr5 | 25756031 | C-A | Homo | ||
| SBS | Chr6 | 3250306 | T-C | HET | ||
| SBS | Chr7 | 15532340 | C-T | Homo | ||
| SBS | Chr7 | 18853725 | A-T | HET | ||
| SBS | Chr9 | 8378571 | C-A | HET | ||
| SBS | Chr9 | 10118791 | A-T | HET | ||
| SBS | Chr9 | 12981880 | C-T | HET | ||
| SBS | Chr9 | 15596009 | C-T | HET | ||
| SBS | Chr10 | 1971205 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g04230 |
| SBS | Chr10 | 18800012 | C-G | Homo | SPLICE_SITE_ACCEPTOR | LOC_Os10g35200 |
| SBS | Chr11 | 7587452 | G-A | Homo |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 4332538 | 4332547 | 9 | |
| Deletion | Chr10 | 5190210 | 5190216 | 6 | LOC_Os10g09610 |
| Deletion | Chr11 | 7270590 | 7270601 | 11 | |
| Deletion | Chr1 | 8270828 | 8270831 | 3 | |
| Deletion | Chr1 | 9851166 | 9851181 | 15 | |
| Deletion | Chr5 | 10358402 | 10358413 | 11 | |
| Deletion | Chr8 | 11125510 | 11125537 | 27 | |
| Deletion | Chr3 | 13121503 | 13121508 | 5 | |
| Deletion | Chr10 | 13489012 | 13489015 | 3 | |
| Deletion | Chr6 | 14074967 | 14074974 | 7 | |
| Deletion | Chr11 | 14515112 | 14515115 | 3 | |
| Deletion | Chr11 | 15216665 | 15216675 | 10 | |
| Deletion | Chr1 | 15459276 | 15459289 | 13 | |
| Deletion | Chr2 | 15616929 | 15616930 | 1 | |
| Deletion | Chr4 | 16723672 | 16723675 | 3 | |
| Deletion | Chr9 | 16826001 | 16839000 | 12999 | LOC_Os09g27660 |
| Deletion | Chr9 | 17140864 | 17140866 | 2 | |
| Deletion | Chr7 | 18176972 | 18176982 | 10 | |
| Deletion | Chr6 | 19850157 | 19850163 | 6 | |
| Deletion | Chr7 | 20922316 | 20922325 | 9 | |
| Deletion | Chr10 | 22557368 | 22557384 | 16 | |
| Deletion | Chr2 | 23404866 | 23404870 | 4 | |
| Deletion | Chr4 | 30086001 | 30110000 | 23999 | 3 |
| Deletion | Chr2 | 33380081 | 33380089 | 8 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 16617443 | 16617444 | 2 | |
| Insertion | Chr11 | 13728647 | 13728647 | 1 | |
| Insertion | Chr6 | 24058389 | 24058694 | 306 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 28301633 | 28637221 | |
| Inversion | Chr6 | 28301634 | 28637223 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 15185520 | Chr6 | 11230555 | LOC_Os06g19670 |
| Translocation | Chr9 | 16826331 | Chr4 | 35388385 | LOC_Os04g59510 |
| Translocation | Chr9 | 16826816 | Chr4 | 35388384 | LOC_Os04g59510 |