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| Mutant Information |
|---|
| Mutant Name | FN4017-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4017-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26998787 | C-T | HET | ||
| SBS | Chr1 | 28972256 | G-A | HET | ||
| SBS | Chr1 | 30180097 | T-G | HET | ||
| SBS | Chr1 | 34624563 | T-C | HET | ||
| SBS | Chr10 | 6995431 | G-A | Homo | ||
| SBS | Chr11 | 17230432 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g29710 |
| SBS | Chr11 | 20938684 | C-T | HET | ||
| SBS | Chr12 | 1898014 | C-T | Homo | ||
| SBS | Chr12 | 25882181 | G-A | HET | ||
| SBS | Chr12 | 8191849 | A-G | HET | ||
| SBS | Chr2 | 11448817 | G-C | HET | ||
| SBS | Chr2 | 20872855 | A-G | HET | ||
| SBS | Chr2 | 26430356 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g43800 |
| SBS | Chr2 | 35378587 | C-T | Homo | ||
| SBS | Chr3 | 16340082 | T-C | HET | ||
| SBS | Chr3 | 19288494 | A-C | HET | ||
| SBS | Chr3 | 32364484 | C-T | HET | ||
| SBS | Chr6 | 23640427 | A-G | Homo | ||
| SBS | Chr6 | 2617627 | C-T | HET | ||
| SBS | Chr8 | 20800182 | A-G | HET | ||
| SBS | Chr8 | 4941730 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g08560 |
| SBS | Chr9 | 4683981 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g08860 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 2886011 | 2886013 | 2 | |
| Deletion | Chr5 | 6969252 | 6969255 | 3 | |
| Deletion | Chr2 | 7542891 | 7542893 | 2 | |
| Deletion | Chr1 | 12710801 | 12710820 | 19 | |
| Deletion | Chr1 | 15157282 | 15157284 | 2 | |
| Deletion | Chr3 | 16948124 | 16948125 | 1 | |
| Deletion | Chr2 | 18439519 | 18439526 | 7 | |
| Deletion | Chr4 | 21754394 | 21754395 | 1 | LOC_Os04g35700 |
| Deletion | Chr11 | 23828001 | 23900000 | 71999 | 7 |
| Deletion | Chr5 | 25899944 | 25899946 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 14222005 | 14222005 | 1 | |
| Insertion | Chr6 | 5968336 | 5968338 | 3 |
Inversions: 9
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 1535660 | 1916243 | 2 |
| Inversion | Chr11 | 19390252 | 19639914 | |
| Inversion | Chr11 | 23824295 | 23930297 | |
| Inversion | Chr11 | 23899094 | 23930305 | |
| Inversion | Chr3 | 28681298 | 28866819 | |
| Inversion | Chr3 | 36230467 | 36310049 | LOC_Os03g64110 |
| Inversion | Chr3 | 36230468 | 36310165 | LOC_Os03g64110 |
| Inversion | Chr1 | 42875308 | 42968930 | 2 |
| Inversion | Chr1 | 42875325 | 42968937 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 1916235 | Chr9 | 14051018 | LOC_Os12g04500 |
| Translocation | Chr12 | 2331412 | Chr9 | 14051025 | |
| Translocation | Chr7 | 3430138 | Chr1 | 35302013 | LOC_Os07g06970 |
| Translocation | Chr7 | 3430142 | Chr1 | 35303039 | 2 |
| Translocation | Chr4 | 16824594 | Chr1 | 11799334 |