Search Results
| Mutant Information |
|---|
| Mutant Name | FN402-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN402-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12257844 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 22196088 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 5087257 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 13947521 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 13559330 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 33948606 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 17328357 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 20536970 | T-C | HET | INTRON | |
| SBS | Chr4 | 20536973 | G-A | HET | INTRON | |
| SBS | Chr4 | 25098577 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 30720808 | G-T | HOMO | INTRON | |
| SBS | Chr4 | 33383601 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 7677131 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 19764974 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 8010889 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 9082058 | T-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 11071497 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 11397633 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 15342146 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr10 | 20074557 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 5792259 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 22966974 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 24050169 | G-A | HET | INTERGENIC |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 2169805 | 2169835 | 30 | |
| Deletion | Chr5 | 4386498 | 4386505 | 7 | |
| Deletion | Chr1 | 6527703 | 6527710 | 7 | |
| Deletion | Chr6 | 6610683 | 6610688 | 5 | |
| Deletion | Chr10 | 7868891 | 7874120 | 5229 | LOC_Os10g15030 |
| Deletion | Chr8 | 7964105 | 7964128 | 23 | LOC_Os08g13390 |
| Deletion | Chr1 | 10606981 | 10606982 | 1 | |
| Deletion | Chr10 | 11071479 | 11071488 | 9 | |
| Deletion | Chr8 | 14291906 | 14291907 | 1 | LOC_Os08g23610 |
| Deletion | Chr4 | 15002721 | 15002724 | 3 | |
| Deletion | Chr2 | 16109930 | 16109931 | 1 | |
| Deletion | Chr5 | 20275681 | 20275684 | 3 | |
| Deletion | Chr4 | 20489810 | 20489827 | 17 | |
| Deletion | Chr3 | 20776893 | 20776904 | 11 | |
| Deletion | Chr12 | 20828009 | 20828010 | 1 | |
| Deletion | Chr12 | 23815845 | 23815851 | 6 | |
| Deletion | Chr1 | 23989302 | 23989304 | 2 | |
| Deletion | Chr6 | 25296808 | 25296811 | 3 | LOC_Os06g42130 |
| Deletion | Chr5 | 25837555 | 25837556 | 1 | |
| Deletion | Chr5 | 27729062 | 27729063 | 1 | |
| Deletion | Chr7 | 28114512 | 28114513 | 1 | |
| Deletion | Chr2 | 29187885 | 29187893 | 8 | |
| Deletion | Chr2 | 29283726 | 29283727 | 1 | LOC_Os02g47860 |
| Deletion | Chr1 | 31251898 | 31251900 | 2 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 3680893 | 3680894 | 2 | |
| Insertion | Chr9 | 15739410 | 15739411 | 2 | LOC_Os09g26130 |
| Insertion | Chr1 | 43134513 | 43134518 | 6 | |
| Insertion | Chr1 | 14632859 | 14632862 | 4 | |
| Insertion | Chr4 | 20682383 | 20682385 | 3 | |
| Insertion | Chr4 | 31490833 | 31490835 | 3 | |
| Insertion | Chr9 | 14615019 | 14615019 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 5675962 | 5772721 |
No Translocation