Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18955485	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g34374
SBS	Chr1	35630508	G-A	Homo
SBS	Chr1	36872201	C-T	Homo
SBS	Chr1	8375894	T-A	HET
SBS	Chr10	12889852	C-A	HET
SBS	Chr10	12963579	C-T	HET
SBS	Chr11	17635972	C-T	HET
SBS	Chr2	16197454	C-T	Homo
SBS	Chr2	7736894	C-A	Homo
SBS	Chr4	28602913	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g48070
SBS	Chr4	34501819	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57910
SBS	Chr4	8287646	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14770
SBS	Chr5	12704311	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g22390
SBS	Chr5	17002172	G-A	HET
SBS	Chr7	18839014	G-A	Homo
SBS	Chr7	21153823	C-T	Homo
SBS	Chr8	1765049	C-A	HET
SBS	Chr8	21826810	A-G	HET
SBS	Chr8	807892	G-A	HET
SBS	Chr9	18721639	C-T	Homo
SBS	Chr9	3844333	A-T	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2737049	2737050	1	LOC_Os09g05080
Deletion	Chr10	3119872	3119885	13
Deletion	Chr8	4253612	4253617	5
Deletion	Chr6	8012001	8062000	49999	5
Deletion	Chr1	11277861	11277864	3
Deletion	Chr12	13301069	13301071	2	LOC_Os12g23520
Deletion	Chr4	15971500	15971510	10
Deletion	Chr4	16008882	16008883	1
Deletion	Chr9	16393054	16393060	6	LOC_Os09g26970
Deletion	Chr6	17250251	17250255	4	LOC_Os06g29960
Deletion	Chr5	18117124	18117127	3
Deletion	Chr5	24224545	24224546	1	LOC_Os05g41350
Deletion	Chr7	25592400	25592401	1	LOC_Os07g42740
Deletion	Chr4	30571786	30571801	15

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	31779987	31779992	6
Insertion	Chr4	31229861	31229862	2
Insertion	Chr6	13196245	13196246	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1914397	1914609	LOC_Os10g04130

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr11	2944927	Chr1	24808146
Translocation	Chr8	11689193	Chr2	13608509
Translocation	Chr11	23449733	Chr8	16434610

Main menu