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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23552980	C-A	HET
SBS	Chr1	38940734	C-T	Homo
SBS	Chr1	9204740	A-G	HET
SBS	Chr10	13799848	C-T	Homo
SBS	Chr10	19621356	C-T	HET
SBS	Chr10	5021210	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g09280
SBS	Chr10	7860117	G-T	Homo
SBS	Chr11	15755604	C-T	HET
SBS	Chr11	15908275	A-C	Homo
SBS	Chr11	8688934	C-G	Homo
SBS	Chr12	11909525	T-A	HET
SBS	Chr12	12365035	C-T	HET
SBS	Chr2	1542738	A-T	Homo
SBS	Chr2	34282939	C-T	HET
SBS	Chr2	7913015	C-T	HET
SBS	Chr3	12953675	G-A	HET
SBS	Chr3	7860652	G-A	HET
SBS	Chr4	14605285	G-A	HET
SBS	Chr4	19194447	A-T	Homo
SBS	Chr4	21790397	G-A	Homo
SBS	Chr4	21970826	A-G	Homo
SBS	Chr5	10190361	C-A	HET
SBS	Chr5	20743332	C-A	Homo
SBS	Chr5	28902844	C-A	HET
SBS	Chr6	3054922	T-C	HET
SBS	Chr6	373688	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g01630
SBS	Chr6	9444349	C-T	HET
SBS	Chr7	15312515	G-A	HET
SBS	Chr7	23123553	T-A	HET
SBS	Chr8	11318430	T-C	Homo
SBS	Chr9	12246969	C-T	HET
SBS	Chr9	12567408	G-A	HET
SBS	Chr9	8718220	G-A	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	3863769	3863774	5
Deletion	Chr6	4037792	4037795	3
Deletion	Chr8	9488424	9488426	2
Deletion	Chr4	9698610	9698611	1
Deletion	Chr3	19450970	19450979	9
Deletion	Chr11	20222342	20222362	20
Deletion	Chr11	21047038	21047041	3	LOC_Os11g35860
Deletion	Chr5	21378197	21378201	4	LOC_Os05g36080
Deletion	Chr4	21425172	21425179	7	LOC_Os04g35250
Deletion	Chr10	21607896	21607897	1	LOC_Os10g40324
Deletion	Chr1	22180356	22180358	2
Deletion	Chr1	23256001	23268000	11999	3
Deletion	Chr3	34651864	34651886	22	LOC_Os03g60992
Deletion	Chr3	36067592	36067595	3

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	4571562	4571570	9	LOC_Os12g08850
Insertion	Chr2	1132283	1132285	3
Insertion	Chr2	688956	688957	2
Insertion	Chr4	30363698	30363705	8
Insertion	Chr7	1373823	1373823	1	LOC_Os07g03427
Insertion	Chr7	26948334	26948335	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	7123141	7306786	2
Inversion	Chr5	28918568	28918726	LOC_Os05g50440
Inversion	Chr2	31606659	31606986	LOC_Os02g51610

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5384427	Chr2	16818173
Translocation	Chr11	6522918	Chr8	5626823	LOC_Os11g11740
Translocation	Chr10	7123137	Chr7	11562235	2
Translocation	Chr10	7306765	Chr6	6169063	LOC_Os10g13510
Translocation	Chr11	10406078	Chr3	25420676	LOC_Os11g18450
Translocation	Chr7	11551442	Chr6	6168146	LOC_Os07g19530
Translocation	Chr4	12370203	Chr2	1489449
Translocation	Chr12	16808031	Chr9	4916627
Translocation	Chr8	22388823	Chr2	16788107	2
Translocation	Chr11	24439230	Chr5	21302435
Translocation	Chr4	27007920	Chr2	28383917
Translocation	Chr7	27333766	Chr3	8528708

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