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Mutant Information

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14005459	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24870
SBS	Chr1	21509543	C-A	HET
SBS	Chr2	5610683	T-A	HET
SBS	Chr2	21447494	C-A	HET
SBS	Chr3	32164369	T-C	Homo
SBS	Chr4	3602	C-T	Homo	STOP_GAINED	LOC_Os04g01006
SBS	Chr4	9088920	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16710
SBS	Chr5	19398991	C-A	HET
SBS	Chr6	9991487	G-A	HET
SBS	Chr7	18497735	C-T	HET
SBS	Chr7	26527721	G-A	HET
SBS	Chr9	2034439	T-C	HET
SBS	Chr10	1146485	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g02850
SBS	Chr10	17929323	A-G	Homo
SBS	Chr10	19266105	G-A	HET
SBS	Chr11	5288715	A-T	HET
SBS	Chr12	5722632	T-C	HET
SBS	Chr12	19304208	C-T	HET
SBS	Chr12	21241568	A-G	HET
SBS	Chr12	27303341	C-T	HET

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2049001	2092000	42999	6
Deletion	Chr8	2861746	2861770	24	LOC_Os08g05420
Deletion	Chr3	9198053	9198064	11
Deletion	Chr10	9659645	9659681	36
Deletion	Chr11	10024566	10024568	2
Deletion	Chr11	12087648	12087651	3
Deletion	Chr8	23749408	23749412	4
Deletion	Chr1	40899001	41143000	243999	43

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	39008668	39008669	2
Insertion	Chr8	27574701	27574702	2
Insertion	Chr12	19997751	19997752	2
Insertion	Chr1	20515110	20515110	1
Insertion	Chr2	15513158	15513168	11
Insertion	Chr8	5022341	5022348	8
Insertion	Chr9	6532726	6532739	14
Insertion	Chr12	5626711	5626711	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	11849862	11897089	LOC_Os06g20580
Inversion	Chr6	11849866	11897107	LOC_Os06g20580
Inversion	Chr11	19291570	19964238	LOC_Os11g32660
Inversion	Chr11	19291580	19964238	LOC_Os11g32660

Translocations: 15

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1207	Chr2	151
Translocation	Chr4	1682394	Chr2	21394561
Translocation	Chr10	5127083	Chr3	13469534	LOC_Os10g09500
Translocation	Chr12	6659879	Chr5	2040949	LOC_Os05g04430
Translocation	Chr9	8359791	Chr1	1373256	2
Translocation	Chr6	10800790	Chr4	16768892
Translocation	Chr9	13941032	Chr4	3152943	LOC_Os04g06070
Translocation	Chr8	15935215	Chr3	12661074
Translocation	Chr4	16492112	Chr2	5772836
Translocation	Chr11	17890250	Chr9	4630672
Translocation	Chr11	20126119	Chr3	8260762	2
Translocation	Chr8	21684693	Chr2	16774703
Translocation	Chr6	27207032	Chr3	6112107
Translocation	Chr6	27231965	Chr3	6112091	LOC_Os06g45020
Translocation	Chr11	28034795	Chr10	1923695	LOC_Os10g04140

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