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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	10199560	T-A	Homo
SBS	Chr2	30572806	T-G	Homo
SBS	Chr3	1838424	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	9773679	T-A	HET
SBS	Chr3	9773680	T-A	HET
SBS	Chr3	12761388	T-A	HET
SBS	Chr4	19045630	C-T	Homo
SBS	Chr5	18217872	T-C	Homo
SBS	Chr5	20369899	T-A	Homo
SBS	Chr6	5894682	G-C	Homo
SBS	Chr6	8644602	G-A	HET
SBS	Chr7	17212213	A-T	Homo
SBS	Chr7	23730795	T-C	Homo
SBS	Chr10	15761109	G-T	HET
SBS	Chr10	21851857	G-A	HET
SBS	Chr11	13816662	G-A	HET
SBS	Chr11	25885317	C-A	Homo
SBS	Chr11	25885318	G-A	Homo
SBS	Chr12	9791088	C-T	Homo
SBS	Chr12	21536858	A-T	HET
SBS	Chr12	22131145	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36100

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1814021	1814025	4
Deletion	Chr1	3611989	3612010	21
Deletion	Chr12	10698726	10698728	2
Deletion	Chr11	10702858	10702871	13
Deletion	Chr8	10754004	10754012	8
Deletion	Chr1	11609487	11609498	11
Deletion	Chr3	17590777	17590778	1
Deletion	Chr9	17855317	17855326	9
Deletion	Chr7	23088911	23088918	7
Deletion	Chr7	27354194	27354204	10	LOC_Os07g45830
Deletion	Chr1	38189815	38189819	4

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	2386978	2386978	1
Insertion	Chr8	3232481	3232483	3
Insertion	Chr8	27234455	27234588	134
Insertion	Chr10	2805544	2805544	1
Insertion	Chr12	16029424	16029437	14	LOC_Os12g27280
Insertion	Chr12	17096932	17096932	1	LOC_Os12g28920

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10958106	11554314	LOC_Os07g19530
Inversion	Chr7	10958112	11554314	LOC_Os07g19530
Inversion	Chr10	15848623	15891767	LOC_Os10g30550

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1003694	Chr3	15239916	LOC_Os03g26690
Translocation	Chr11	24747895	Chr3	27525954	2

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