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| Mutant Information |
|---|
| Mutant Name | FN4025-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4025-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26531814 | G-C | Homo | ||
| SBS | Chr10 | 2713782 | T-C | Homo | ||
| SBS | Chr10 | 8895039 | G-T | Homo | ||
| SBS | Chr11 | 19490901 | G-A | HET | ||
| SBS | Chr11 | 19490902 | A-T | HET | ||
| SBS | Chr11 | 2724197 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g05840 |
| SBS | Chr11 | 975838 | G-A | Homo | ||
| SBS | Chr11 | 975839 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g02880 |
| SBS | Chr12 | 15102423 | G-A | HET | ||
| SBS | Chr12 | 21403619 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g35200 |
| SBS | Chr2 | 17634418 | G-A | HET | ||
| SBS | Chr3 | 17559100 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g30800 |
| SBS | Chr3 | 19193661 | G-A | Homo | ||
| SBS | Chr3 | 2738129 | A-T | HET | ||
| SBS | Chr3 | 28529417 | C-T | HET | ||
| SBS | Chr3 | 311567 | A-G | HET | ||
| SBS | Chr3 | 33246477 | T-C | Homo | ||
| SBS | Chr3 | 33246478 | C-T | Homo | ||
| SBS | Chr4 | 13618823 | A-G | HET | ||
| SBS | Chr4 | 16196691 | C-G | HET | ||
| SBS | Chr4 | 4748981 | C-A | HET | ||
| SBS | Chr4 | 6790723 | C-T | HET | ||
| SBS | Chr7 | 16697619 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g28530 |
| SBS | Chr7 | 4622042 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g08890 |
| SBS | Chr8 | 27384675 | A-T | Homo | ||
| SBS | Chr9 | 1050004 | T-C | Homo | ||
| SBS | Chr9 | 13900419 | G-A | Homo | ||
| SBS | Chr9 | 6633119 | C-T | Homo |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2559604 | 2559607 | 3 | LOC_Os12g05570 |
| Deletion | Chr8 | 8778088 | 8778093 | 5 | |
| Deletion | Chr1 | 10301331 | 10301334 | 3 | |
| Deletion | Chr11 | 17583694 | 17583709 | 15 | |
| Deletion | Chr11 | 25055441 | 25056039 | 598 | |
| Deletion | Chr1 | 32551837 | 32551844 | 7 |
Insertions: 5
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 10152453 | 10365244 | 2 |
| Inversion | Chr2 | 10152478 | 10365248 | 2 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3319704 | Chr1 | 19774679 | LOC_Os04g06360 |
| Translocation | Chr5 | 7217625 | Chr2 | 21442606 | |
| Translocation | Chr7 | 8909704 | Chr2 | 473794 | LOC_Os07g15410 |
| Translocation | Chr4 | 17228510 | Chr3 | 26761877 | LOC_Os03g47310 |
| Translocation | Chr11 | 17512064 | Chr7 | 13570811 | |
| Translocation | Chr10 | 18185855 | Chr9 | 3032041 | 2 |
| Translocation | Chr10 | 18186517 | Chr3 | 32966325 | 2 |
| Translocation | Chr10 | 18187054 | Chr3 | 32966323 | LOC_Os03g57870 |
| Translocation | Chr12 | 21737271 | Chr6 | 7862478 | LOC_Os06g14100 |
| Translocation | Chr3 | 25386582 | Chr1 | 15783907 | |
| Translocation | Chr11 | 27282750 | Chr10 | 17466607 | LOC_Os11g45090 |