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| Mutant Information |
|---|
| Mutant Name | FN4031-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4031-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12475635 | G-T | HET | ||
| SBS | Chr1 | 38611455 | C-G | HET | ||
| SBS | Chr1 | 40075482 | T-C | HET | ||
| SBS | Chr10 | 2201519 | C-T | Homo | ||
| SBS | Chr10 | 5470410 | A-C | HET | ||
| SBS | Chr11 | 11642319 | G-A | HET | STOP_GAINED | LOC_Os11g20150 |
| SBS | Chr11 | 13305416 | A-T | HET | ||
| SBS | Chr11 | 17240722 | G-A | HET | ||
| SBS | Chr2 | 11452393 | G-A | HET | ||
| SBS | Chr3 | 189039 | A-G | HET | ||
| SBS | Chr3 | 19622738 | G-A | HET | ||
| SBS | Chr3 | 21769043 | T-C | HET | ||
| SBS | Chr3 | 23123639 | G-A | Homo | ||
| SBS | Chr3 | 28043010 | G-A | Homo | ||
| SBS | Chr4 | 12372401 | A-C | HET | ||
| SBS | Chr4 | 13719613 | C-T | HET | ||
| SBS | Chr4 | 24809387 | T-C | Homo | ||
| SBS | Chr4 | 3486537 | A-T | HET | ||
| SBS | Chr4 | 406672 | G-T | HET | ||
| SBS | Chr7 | 20831693 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g34770 |
| SBS | Chr7 | 21122257 | T-A | Homo | ||
| SBS | Chr7 | 9256957 | T-A | Homo | ||
| SBS | Chr8 | 13833201 | G-A | HET | ||
| SBS | Chr8 | 16031887 | C-G | Homo | ||
| SBS | Chr8 | 19996128 | T-A | Homo | ||
| SBS | Chr8 | 23736931 | C-A | HET | ||
| SBS | Chr9 | 14129349 | C-A | Homo | ||
| SBS | Chr9 | 14194468 | G-A | Homo |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1139005 | 1139035 | 30 | |
| Deletion | Chr7 | 2505101 | 2505102 | 1 | |
| Deletion | Chr4 | 2821675 | 2821680 | 5 | LOC_Os04g05570 |
| Deletion | Chr11 | 3518693 | 3518706 | 13 | LOC_Os11g07060 |
| Deletion | Chr6 | 3652798 | 3652799 | 1 | |
| Deletion | Chr8 | 3802775 | 3802783 | 8 | LOC_Os08g06810 |
| Deletion | Chr6 | 5235086 | 5235088 | 2 | |
| Deletion | Chr6 | 7189564 | 7189566 | 2 | |
| Deletion | Chr2 | 7287785 | 7287793 | 8 | |
| Deletion | Chr2 | 8290073 | 8290079 | 6 | |
| Deletion | Chr2 | 9531229 | 9531236 | 7 | |
| Deletion | Chr2 | 10954308 | 10954322 | 14 | |
| Deletion | Chr10 | 15629001 | 15887000 | 257999 | 44 |
| Deletion | Chr10 | 21142780 | 21142785 | 5 | |
| Deletion | Chr10 | 21955566 | 21955567 | 1 | |
| Deletion | Chr10 | 22372729 | 22372733 | 4 | |
| Deletion | Chr3 | 23351529 | 23351534 | 5 | LOC_Os03g42030 |
| Deletion | Chr5 | 25944001 | 25969000 | 24999 | 6 |
| Deletion | Chr1 | 28248026 | 28248030 | 4 | |
| Deletion | Chr1 | 38054911 | 38054913 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 29834100 | 29834100 | 1 | LOC_Os01g51890 |
| Insertion | Chr4 | 1579844 | 1580079 | 236 | |
| Insertion | Chr6 | 17372725 | 17372734 | 10 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 22827900 | Chr5 | 15579833 |