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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27670077	T-A	HET
SBS	Chr1	5601568	T-G	HET
SBS	Chr10	19412164	C-T	Homo
SBS	Chr11	11025055	T-A	Homo
SBS	Chr11	11289367	G-A	Homo
SBS	Chr11	15535295	A-T	Homo
SBS	Chr11	15535296	G-T	Homo
SBS	Chr11	2234290	C-T	Homo
SBS	Chr11	24237317	T-A	Homo
SBS	Chr11	27015013	A-G	HET
SBS	Chr12	20201235	A-T	Homo
SBS	Chr12	20201236	T-C	Homo
SBS	Chr12	2798497	C-T	Homo
SBS	Chr2	30928291	G-A	HET
SBS	Chr2	30928313	G-A	HET
SBS	Chr2	33466287	C-T	Homo
SBS	Chr2	3737236	C-T	HET
SBS	Chr3	24595138	C-A	HET
SBS	Chr3	36004759	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g63770
SBS	Chr4	15973153	G-A	HET
SBS	Chr4	26827263	C-T	HET
SBS	Chr5	13954872	C-T	HET
SBS	Chr5	16349853	G-A	Homo
SBS	Chr5	24448941	C-A	Homo
SBS	Chr6	1736376	C-T	HET
SBS	Chr6	1740689	C-T	HET
SBS	Chr6	23814179	A-T	Homo	STOP_GAINED	LOC_Os06g40030
SBS	Chr6	27525789	A-C	HET
SBS	Chr6	6615919	T-C	Homo
SBS	Chr7	15448998	C-A	Homo
SBS	Chr7	15448999	T-C	Homo
SBS	Chr7	3532492	C-T	Homo
SBS	Chr8	15074804	G-A	Homo
SBS	Chr8	15516413	A-T	Homo
SBS	Chr8	3422789	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g06200

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	235845	235846	1
Deletion	Chr12	3122048	3122066	18
Deletion	Chr12	4917787	4917813	26
Deletion	Chr6	5383976	5383977	1
Deletion	Chr10	8237852	8237853	1
Deletion	Chr6	8520630	8520652	22
Deletion	Chr12	10818451	10818458	7
Deletion	Chr2	11595757	11595771	14
Deletion	Chr4	12026504	12026526	22
Deletion	Chr3	14587492	14587501	9
Deletion	Chr7	20039001	20049000	9999	2
Deletion	Chr7	20077001	20119000	41999	7
Deletion	Chr9	20725735	20725747	12
Deletion	Chr4	23472050	23472080	30
Deletion	Chr3	33046455	33046458	3
Deletion	Chr1	40986425	40986432	7

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	35066986	35066988	3
Insertion	Chr3	26232205	26232205	1
Insertion	Chr5	5940293	5940298	6

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23621536	24088994	2
Inversion	Chr7	23621538	24088994	2
Inversion	Chr8	24749871	24990606	2
Inversion	Chr8	24749884	24990629	2
Inversion	Chr1	36889258	36894771	2
Inversion	Chr1	36889265	36894804	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	7274779	Chr5	22892619	LOC_Os08g12350
Translocation	Chr7	20078613	Chr1	37173635	LOC_Os07g33610
Translocation	Chr7	20114834	Chr1	37170792	LOC_Os07g33660
Translocation	Chr11	28826659	Chr7	20054665
Translocation	Chr11	28826671	Chr7	20049341

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