Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16286956	C-T	Homo
SBS	Chr1	29465923	C-T	HET
SBS	Chr1	33357028	C-A	HET
SBS	Chr1	4672104	C-T	HET
SBS	Chr11	18226126	C-A	Homo
SBS	Chr11	26921335	C-G	HET
SBS	Chr12	13168326	T-C	Homo
SBS	Chr2	27929064	A-T	HET
SBS	Chr3	10645392	A-G	Homo
SBS	Chr4	11885713	G-A	HET
SBS	Chr4	17207390	G-A	HET
SBS	Chr4	35383195	G-A	Homo
SBS	Chr5	6519464	T-A	HET
SBS	Chr6	12318935	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	15302800	A-T	HET
SBS	Chr6	16017119	T-A	HET
SBS	Chr7	16432755	G-A	HET
SBS	Chr8	16934887	A-C	HET
SBS	Chr8	17076997	G-C	HET
SBS	Chr8	22989988	T-C	HET
SBS	Chr8	24545999	A-T	HET
SBS	Chr9	11134156	A-G	HET

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3020750	3020752	2	LOC_Os09g06410
Deletion	Chr11	7746719	7746721	2	LOC_Os11g13970
Deletion	Chr10	14396260	14396264	4
Deletion	Chr3	18142153	18142160	7
Deletion	Chr7	23803001	23822000	18999	4
Deletion	Chr7	28028176	28028177	1	LOC_Os07g46880
Deletion	Chr2	30706712	30706713	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19947889	19947889	1
Insertion	Chr10	22052596	22052597	2
Insertion	Chr3	20536339	20536340	2
Insertion	Chr4	8750368	8750371	4
Insertion	Chr7	23468619	23468626	8

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	13410008	13614974
Inversion	Chr12	21145257	21284770	LOC_Os12g34970
Inversion	Chr12	21145259	21284773	LOC_Os12g34970

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	338457	Chr5	11351523	2
Translocation	Chr8	16707233	Chr3	18172603	LOC_Os08g27360
Translocation	Chr11	16760293	Chr1	5706421	LOC_Os01g10680
Translocation	Chr12	20641834	Chr4	32929272	LOC_Os12g34100

Main menu